Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0189 ATGCCCAACCTTGTGTATGTGTCCAGAGGGAAAAGCATGAATTTGCCCCACAATTTCAAGGCGGGCGCTCTTAATGTCCTGCTACGAGTATCGGCCACCATGACCAACGCACCGGTAATCCTAACACTAGATACTGATATGTACTCCAATGATCCTCAAACACCGGTTCGTGTGCTGTGTTATCTCTTGGACCCTGGCATGGATCCCAAACTGGGGTACGTTCAGTTTCCTCAGATCTTCCATGGAATCAATGAGAATGATATTTATGGAGGTCAACTCAAATTAGAGTTCCAAATTGATGCCAGTGGAATGGATGGATTGGTTGGCCCTACATATGTAGGTACTGGATGCTTTTTCAGGCGAGGAGTCTTCTTTGGTGGTCCATCAGAAACCCCAGAACTGAACCAGGATCATCTAGTGAACGAGTCAATCAATTCCAAAGAAGTTTTAGCAATGGCACACCATGTTGCAGACTGCAATTTTGAGAAGCAAACCAAATGGGGCACTGAAATGGGCTTAAGGTATGGATCATTGGTTGAGGACTTCTACACCGGCTATCTGCTACAATGTAAAGGTTGGAAGTCCATTTTCTGCAACCCCAAAAGGCCTGCATTTCTGGGAAATTCACCTATCAACCTTCACAGCATCCTGAATCAAATTATGCGATGGTCTGTTGGCCTCCTTGAAGTGGCCTTCTGCAGATATAGTCCCATCACTTTCGGAGTCAAGTCCATAAACCCTCTTACAGGGCTATGTTATGCTCACTACGCCTTCTGGTCAATATGGTCCATTCCAATTACCATCTATGCCTTTGTCCCCCAGCTAGCTCTGCTCAATTGTGCCTCAATATTCCCAAAGGCATCGGAACCTTGGTTTTTATTGTACATATTCCTTTTCCTTGGTGCCTATGGGCAAGAGTGTCTCGAGTTTATGTTAGATGGAGAATCAATCCAAAGATGGTGGAACAATCAGAGGATGTGGACAATTAGGGGACTCTCAAGTTTCATTTTTGGATTGGCTGAATACTGGCTGAAGTTCATTGGCATTTCCACATTTGGATTTAATGTTACAAGCAAGGTAGTTGATGAGGAACAAAGCAAGCGATATAATCAAGGGATTTTCGATTTTGGAGTCCCATCACCCTTGTTCTTGCCCATAACAACAGCTGCAGTAATCAACTTGGTCTCATTCCTATGGGGCATAGTACACGTTTTGAAGCAAAGAGACCTTGAAGGTCTATTTATGCAGATGCTCTTGGCCAGTTTTGCAATAGTGAATTGCTGGCCGCTGTATGAAGCCATGGTCTTGAGGACTGATGAAGGAAAGATGCCTGTGAAGATCACATTGATCTCAATTACTCTTGCATGGGCTCTTTACTTGGTAGCCCCCGTCGTATTTTAA 1401 0.4433 MPNLVYVSRGKSMNLPHNFKAGALNVLLRVSATMTNAPVILTLDTDMYSNDPQTPVRVLCYLLDPGMDPKLGYVQFPQIFHGINENDIYGGQLKLEFQIDASGMDGLVGPTYVGTGCFFRRGVFFGGPSETPELNQDHLVNESINSKEVLAMAHHVADCNFEKQTKWGTEMGLRYGSLVEDFYTGYLLQCKGWKSIFCNPKRPAFLGNSPINLHSILNQIMRWSVGLLEVAFCRYSPITFGVKSINPLTGLCYAHYAFWSIWSIPITIYAFVPQLALLNCASIFPKASEPWFLLYIFLFLGAYGQECLEFMLDGESIQRWWNNQRMWTIRGLSSFIFGLAEYWLKFIGISTFGFNVTSKVVDEEQSKRYNQGIFDFGVPSPLFLPITTAAVINLVSFLWGIVHVLKQRDLEGLFMQMLLASFAIVNCWPLYEAMVLRTDEGKMPVKITLISITLAWALYLVAPVVF* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0189 466 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 2 126 IPR029044 -
Vvi2g0189 466 SUPERFAMILY Nucleotide-diphospho-sugar transferases 14 268 IPR029044 -
Vvi2g0189 466 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 449 - -
Vvi2g0189 466 Pfam Cellulose synthase 1 127 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi2g0189 466 Pfam Cellulose synthase 138 461 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi2g0189 466 FunFam Cellulose synthase-like protein G3 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0189 Vvi-Chr2 1675840 1677891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0189 1 466 Glycosyltransferase AT4G23990 56.780 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0189 - - vvi:100258251 959.133