Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0185 ATGGCAGCTTTTGCAGGAATTTGTTCTTCTGGTGTGCGTTTTAGAGGCAAAGAATCAGGGTCTCTGGCTCAGTACCATGGGCTCAGGCCAGTGGAGAGCAAGAAAATGGCTTCAGCTATGGTTAGGCCAAGTGGGTCAATTTCATCTCCAGCTCGGAAATGCAGAACAATCAGGGCAGTGGCTTCTCCAACTGTTTCTGCTCCCAAGAGGGAAAAAGATCCCAAGAAGCGAATTGTCATAACAGGAATGGGCCTTGTTTCAGTTTTTGGCAGTGACATTGATACATTCTATGATAAACTCCTCCAAGGAGTGAGTGGGATTAGCCTAATTGACAGGTTTGATGCTTCAAACTTTTCTGTCCGGTTTGGCGGTCAGATTCGTGATTTCTCTTCCAAAGGCTACATTGATGGGAAAAATGATCGGCGTCTTGATGATTGCTGGAGGTACTGTTTAGTTGCTGGCAGGAGAGCCCTTGACAATGCCAGCCTTGGAACCGAAGTCCTTGAAACTATGGACAGGTCGAGAATTGGTGTTCTAGTGGGATCAGGCATGGGAGGCTTAACAGCATTTAGCAATGGAGTAGAAGCTCTTATCCAAAAGGGATATAAGAAGATAACTCCATTTTTCATCCCGTACTCCATCACCAATATGGGTTCAGCATTGTTAGCTATAGATACCGGCTTAATGGGGCCCAATTACTCCATTTCAACAGCTTGTGCTACTGCAAATTACTGCTTTTATGCAGCTGCCAATCACATTAGAAGAGGTGAAGCAGATATCATGGTAGCTGGTGGGACTGAGGCCGCCATTATGGCTACTGGGGTTGGTGGCTTTATAGCTTGTCGGGCTTTGTCTCAAAGAAATGAGGACCCTCAGAAAGCCTCTAGACCATGGGACAAAGATCGTGATGGCTTTGTCATGGGAGAAGGCTCTGGTGTGCTGATTATGGAGAGCTTGGAGCATGCAATGAAAAGAGGAGCCAATATAATTGCAGAGTATTTGGGAGGTGCTATTACATGTGATGCTCATCATATGACCGATCCCCGGTCGGATGGTCTTGGAGTTTCTTCATGCATAGCCAAGAGTTTGGAAGATGCTGGAGTTTCACCAGAAGAGGTGAACTATGTGAATGCTCATGCAACATCAACTCTGGCAGGGGATTTGGCAGAGGTCAATGCCATCAAGAAGGTCTTCAAGGACACATCTGAGATAAAGATGAACGGGACTAAGTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAATATAACTTGGAGCCTGATGTAACAATTGACACTGTTCCAAATGTGAAGAAAAAGCATGAAGTTCATGTTGGTATCTCTAATTCATTTGGCTTTGGTGGGCACAACTCTGTAGTTGTTTTTGCTCCTTTCAACCCCTAA 1467 0.4554 MAAFAGICSSGVRFRGKESGSLAQYHGLRPVESKKMASAMVRPSGSISSPARKCRTIRAVASPTVSAPKREKDPKKRIVITGMGLVSVFGSDIDTFYDKLLQGVSGISLIDRFDASNFSVRFGGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGRRALDNASLGTEVLETMDRSRIGVLVGSGMGGLTAFSNGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMVAGGTEAAIMATGVGGFIACRALSQRNEDPQKASRPWDKDRDGFVMGEGSGVLIMESLEHAMKRGANIIAEYLGGAITCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEIKMNGTKSMIGHGLGAAGGLEAIATIKAITTGWIHPTINQYNLEPDVTIDTVPNVKKKHEVHVGISNSFGFGGHNSVVVFAPFNP* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0185 488 ProSitePatterns Ketosynthase family 3 (KS3) active site signature. 230 246 IPR018201 GO:0004315|GO:0006633
Vvi2g0185 488 Pfam Beta-ketoacyl synthase, N-terminal domain 76 322 IPR014030 -
Vvi2g0185 488 CDD KAS_I_II 76 483 IPR000794 -
Vvi2g0185 488 Pfam Beta-ketoacyl synthase, C-terminal domain 331 442 IPR014031 -
Vvi2g0185 488 NCBIfam beta-ketoacyl-ACP synthase II 76 483 IPR017568 GO:0006633|GO:0016747
Vvi2g0185 488 Gene3D - 40 487 IPR016039 GO:0016746
Vvi2g0185 488 SUPERFAMILY Thiolase-like 290 484 IPR016039 GO:0016746
Vvi2g0185 488 FunFam 3-oxoacyl-[acyl-carrier-protein] synthase 2 50 488 - -
Vvi2g0185 488 SUPERFAMILY Thiolase-like 76 327 IPR016039 GO:0016746
Vvi2g0185 488 SMART Beta-ketoacyl synthase 78 488 IPR020841 -
Vvi2g0185 488 ProSiteProfiles Ketosynthase family 3 (KS3) domain profile. 75 485 IPR020841 -
Vvi2g0185 488 PANTHER POLYKETIDE SYNTHASE-RELATED 74 486 IPR000794 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0185 Vvi-Chr2 1643880 1646636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0185 52 488 Acyl Lipid Metabolism Gene Families AT5G46290 74.393 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0185 K09458 - vvi:100242694 961.059