Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0180 ATGGAGATTGCCTCTAGCTTTGCAGGCGATTTCTCATTTTTGCAGTTTTTAGTAGCGCTAGTGGTGTCCGGACTCTGTTTGGTGTGCGCTCTGTTCGCCGTCCGATTTTCTCCGGCGTCGTTTGGCCGGAAATCGAGATCAGTGGAATCGGACGGGGGCGGGAGTGGGGGTTCATTGAGAAAGGCGTGTTCTTGTGATTGTTTGTGTAGGAGTGCGGAGTCAGGACCGGCGACGGCGACGGCGGCTGCGGCGGCGTACTTGAACGGTGGTGCAGAGGAGATGCTAGATAGGGCCCTGGTGGTATCGGAGCGGCAGACGGGGGCCTCGATGATGGAGCAGTTGGTGCCGGAGATTACGACTCATGCGCTGAGTTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGGATTTCACATTGGAACAAGACAGTGTGACACCAACCAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTGTGAATATCAATGCGGAATTCTTTAACATCATCAGAGAAAGATCAATTACATCGATGAGTCGTCTTTGGTTTAATGCAGATTATGTGAAGTGTGTTCACGCCTCAGGAGAGCTTTTCACAGGGTACAATGCAGTAATAGAGAGCTGGCAGCTTGCCTTCAACTGGGACCAAGGTGTCGACTTCCAGGTGCGGGATGTAAGGGCTCGGGTGCTTACAGACATGGCTTGGGTCACAATGAAAACTTTCGTTGACATGGAAACTGGGCCATTTAACGTAACAAATGTTTTTGAGTTCCATAATGGCCGCTGGTTCATGGTGCACCATCATAGTTCTGTGCTCATTGATGGAGAGGTGGATCAACAGATTGTGAATGGGTAG 924 0.5011 MEIASSFAGDFSFLQFLVALVVSGLCLVCALFAVRFSPASFGRKSRSVESDGGGSGGSLRKACSCDCLCRSAESGPATATAAAAAYLNGGAEEMLDRALVVSERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIVNINAEFFNIIRERSITSMSRLWFNADYVKCVHASGELFTGYNAVIESWQLAFNWDQGVDFQVRDVRARVLTDMAWVTMKTFVDMETGPFNVTNVFEFHNGRWFMVHHHSSVLIDGEVDQQIVNG* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0180 307 SUPERFAMILY NTF2-like 177 295 IPR032710 -
Vvi2g0180 307 SUPERFAMILY F-box domain 107 181 IPR036047 GO:0005515
Vvi2g0180 307 CDD F-box_FBXL4 112 157 - -
Vvi2g0180 307 Gene3D - 96 152 - -
Vvi2g0180 307 Gene3D - 172 303 - -
Vvi2g0180 307 Pfam SnoaL-like domain 183 296 IPR037401 -
Vvi2g0180 307 PANTHER F-BOX PROTEIN SKIP8 11 306 IPR044260 -
Vvi2g0180 307 ProSiteProfiles F-box domain profile. 108 154 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0180 Vvi-Chr2 1611374 1614945 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0180 - - vvi:100264977 602.438