Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0179 ATGAAGAAACCTCGAAATGGCTCCATAAATACAAAATTTTGTGGCAACAGTGAGAATAGGAAGAGCTTCTTCGAACTCTCTTTGTCTCTGATCTTCTCACTGTGGTGCCTTGTGTTCTTGTTCTACTCTAAGCGTGGCCTCAGCCATGGAAATGGAGCAAATTCACATCCTGACAACAGAAGCATGCCTTATTCTACTGTTTGCAATGGTGAACTTTGCAACAGTGCATACTCATATGTTGCAAATGGAAGCAGTAATCATATGAACGGGACACTGCTAGAGTTTAATATTTCTATGCACAGAAATGAATCCGCCATTCCTCGTGACTCTGAAAATCTGGAGTTCTCACTTAAGGAGACAAGTAGCTTAGAGGAATTAGTCTGGAGTATTCTAGGTTACACTGCTTTAGTCTGTGAAGTACAGCTACAGCCACTAGAAGAACAGAAGAAACATATAGCAGAACAAATACCCAGTGAAAGAACTCACTCCACTTATATAAATCTTGATGAGTTTCGAAACACAACAAGGCAGGAAAGAAGCTGGAGCATGCCTAGTCAGCTTGTGAATATTACCCACCACCTTGAGCCTGATGGAACAGAGTATAACTATGCCTCTGTATCGAAAGGTGCAAAGGTGGTGGCTCATAACAAGGAAGCAAAAGGAGCAAGTAACATATTGGGGAAGGATCATGATAAATACCTGAGAAATGCTTGTTCTGTTGGCGAGAAGTTTGTTGTGGTTGAACTTGCTGAGGAAACGTTGGTTGATGCAATCAAAATTGCGAATTTTGAACATTATTCATCAAATGTAAAGGAATTTACGTTGTCTGGTAGTTTAAGTTATCCAACTGAAAAATGGTTCCTACTTGGTAATTTTGTTGCAGCAAATGTCAAGCATGCTCAAAGCTTTAAGTTGCCTGAACCGAAATGGGTTAGGTACTTGAAACTGAATTTAATCACTCATTATGGATCTGAATTTTACTGTATACTGAGTGTTTTCGAGGTGTATGGAGTTGATGCAATCGAGCGGATGCTAGAAGATCTCATTGTGGCTAATGAAGACCCCACTCCAGGGAAATTTGTGAATCCTAATTCAAGTTCAATGCCTTCTTCAGAACCAATTGACAGGAAAATTAAAGGTGAATTGCAAATTGGGGTTGGTAAAGGTACAGAGAACACTGGTGATGCACCAATTGCTAGAGTAGGCATGACGAAGGATCCAGCGGCCATGCATAAGATTCCTGACCCTGTAGTGGAAGTTAGACAGATGCCAACTGGTAGAATACCTGGTGACACTGTTCTCAAGATCTTGATGCAGAAAGTGAGGTCACTTGAGCTGAACTTGTCTGTGTTGGAGGAGTATATCAAAGAACTGAACCGAAGAGAGGGGAACGTTTTGCCAGAGCTTGATAAAGAGCTATCTAGAATCTCGTTGCTTTTGGAGAAGAGCAGAGCAGAAATAAAGGATCTCTTGGAATGGAAGGAGATTACGGAGAAAGGAATTACGGATCTTGAATCATGGAAAACTGCTGTCTCATCTCAAGTGCAGGAATTGGCCAGAGAAAATGACATGTTAAGGCTGGATGTTAAGAAGGTAGTAACCGAGCAGAGTAGTCTGGAGAACAAAGAACTGGCCGTTGTTGCAGTAAGCTTCTCCATTGCATGTGTAGCAGTTCTGAAGCTGGTTTCAGACCGGGTTTTGACACTTTTTGGGGCGGCTCAGTCCGGCGAGGTTGGCCAGAAAAGTAGAGGTTGGGTTTTGATACTTGTTAGCAGCAGCATGATGATATTCATCACCTTTCTTTGTAGTTAG 1812 0.4183 MKKPRNGSINTKFCGNSENRKSFFELSLSLIFSLWCLVFLFYSKRGLSHGNGANSHPDNRSMPYSTVCNGELCNSAYSYVANGSSNHMNGTLLEFNISMHRNESAIPRDSENLEFSLKETSSLEELVWSILGYTALVCEVQLQPLEEQKKHIAEQIPSERTHSTYINLDEFRNTTRQERSWSMPSQLVNITHHLEPDGTEYNYASVSKGAKVVAHNKEAKGASNILGKDHDKYLRNACSVGEKFVVVELAEETLVDAIKIANFEHYSSNVKEFTLSGSLSYPTEKWFLLGNFVAANVKHAQSFKLPEPKWVRYLKLNLITHYGSEFYCILSVFEVYGVDAIERMLEDLIVANEDPTPGKFVNPNSSSMPSSEPIDRKIKGELQIGVGKGTENTGDAPIARVGMTKDPAAMHKIPDPVVEVRQMPTGRIPGDTVLKILMQKVRSLELNLSVLEEYIKELNRREGNVLPELDKELSRISLLLEKSRAEIKDLLEWKEITEKGITDLESWKTAVSSQVQELARENDMLRLDVKKVVTEQSSLENKELAVVAVSFSIACVAVLKLVSDRVLTLFGAAQSGEVGQKSRGWVLILVSSSMMIFITFLCS* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0179 603 Coils Coil 515 535 - -
Vvi2g0179 603 Coils Coil 434 461 - -
Vvi2g0179 603 PANTHER MEMBRANE PROTEIN CH1 RELATED 2 577 IPR045120 GO:0016020
Vvi2g0179 603 Pfam Sad1 / UNC-like C-terminal 215 338 IPR012919 -
Vvi2g0179 603 Gene3D - 161 347 - -
Vvi2g0179 603 ProSiteProfiles SUN domain profile. 180 340 IPR012919 -
Vvi2g0179 603 SUPERFAMILY Galactose-binding domain-like 240 337 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0179 Vvi-Chr2 1605079 1609383 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0179 - - vvi:100259778 1180.62