Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0176 ATGCTTGCTTTTACACGTTGCTTTTGCTTGAAGAAGGCTAAGCAGCATCCTGGGTACGAGGACCCCACTACTCTTGCTTCTGAAACACCTTTTACTGTAAATGAGGTCGAGGCATTATACGATCTATTCAAGAAACTAAGCAGTTCCATAATTGATGATGGTTTCATACACAAGGAAGAATTTCAGTTTGCTCTTTTCAGGAACAGAAGTAAGCAGAGTCTCTTTGCAGACAGGGTGTTTGATCTTTTTGATATTAAGCATAATGGGGTCATTGAATTTGGAGAATTTGTTCGATCATTAAGCATTTTTCACCCAAATGCTCCCAACGAAGACAAAATGGAATTTGCATTTAAATTGTATGATCTAAGGCAGACTGGCTACATTGAGCGTGAAGAGTTGACGGAGATGGTTTCAGCTATTCTTAATGAATCGGATCTGGAAATTTCAGAAGACATTGTTGAATCAATCGTGGATAAGACAATGGCAGAGGCAGATTTGAAAGGAGATGGGAAGATTGATAAAGAAGAGTGGAAGGAATTTGTAGCCCGGAATCCATCAATCCTAAGAAACATGACTCTTCCATACTTAAAGCAGATAACTCTAGCATTTCCCAGCTTTGTGCTGAACTCTGAGGTACAAGATTCAGATATTGTAGCCTAA 660 0.3924 MLAFTRCFCLKKAKQHPGYEDPTTLASETPFTVNEVEALYDLFKKLSSSIIDDGFIHKEEFQFALFRNRSKQSLFADRVFDLFDIKHNGVIEFGEFVRSLSIFHPNAPNEDKMEFAFKLYDLRQTGYIEREELTEMVSAILNESDLEISEDIVESIVDKTMAEADLKGDGKIDKEEWKEFVARNPSILRNMTLPYLKQITLAFPSFVLNSEVQDSDIVA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0176 219 SMART efh_1 112 140 IPR002048 GO:0005509
Vvi2g0176 219 SMART efh_1 75 103 IPR002048 GO:0005509
Vvi2g0176 219 SMART efh_1 156 184 IPR002048 GO:0005509
Vvi2g0176 219 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Vvi2g0176 219 SUPERFAMILY EF-hand 24 206 IPR011992 -
Vvi2g0176 219 Gene3D - 21 215 - -
Vvi2g0176 219 Pfam EF-hand domain pair 111 180 IPR002048 GO:0005509
Vvi2g0176 219 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Vvi2g0176 219 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Vvi2g0176 219 PANTHER CALCINEURIN B 6 215 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vvi2g0176 219 FunFam calcineurin B-like protein 3 21 214 - -
Vvi2g0176 219 PRINTS Recoverin family signature 126 144 - -
Vvi2g0176 219 PRINTS Recoverin family signature 79 100 - -
Vvi2g0176 219 PRINTS Recoverin family signature 172 192 - -
Vvi2g0176 219 CDD EFh 112 182 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0176 Vvi-Chr2 1579484 1582047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0176 1 197 EF-hand Containing Proteins AT1G64480 70.051 9.36e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0176 K06268 - vvi:100254683 436.417