Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0175 ATGGGCTGTGCTTGTATGAAGCAGCGGCAGGAACGCAAAAGCGCAGTGCTTCTTGCTGCTCAAACTTGCTTTAAAGTGGCAGATGTGGAAGCTTTGTATGAGCTGTTCAGGAAATTAAGCAGTTCTGTGGTTGATGATGGACTTATCAGCAAAGATGAGTTTCGGCTTGGCTTATTCAGGAACAGCAAGAAGCAGAGTCTTCTTGCAGATAGGATCTTCAATCTGTTCGACTTGAAACATGATGGGATGATAGAGTTTGGAGAATTCATCCGGTCTTTGAGCATTTTCCACCCAGATGCTCCCCAAGAAGAAAAAATTGCTTTTGCATTTCAATTATACAATACAGGACAGACAGGCTTCATCGAACATGAGGAGGTCAGGGAGATGGTTTTCGCCTTCCTGAATGAGTCAGACTTGATCCTTTCTGATGACCTTGTTGAAGCCATTATTGATAAGACTTTCAGTGAAGTAGATACAAAAGGAGATGGAAAGATTGATCCAGAAGAGTGGAATGAATTCATTTCTCGGAATCCATCCATACTAAAGAACATGACCATCCCATATTTGAAGGATATCGGAACTTCATTTCCCAGTTTTGTGCTGAGATCAGACCCTGAAGATTAA 624 0.4199 MGCACMKQRQERKSAVLLAAQTCFKVADVEALYELFRKLSSSVVDDGLISKDEFRLGLFRNSKKQSLLADRIFNLFDLKHDGMIEFGEFIRSLSIFHPDAPQEEKIAFAFQLYNTGQTGFIEHEEVREMVFAFLNESDLILSDDLVEAIIDKTFSEVDTKGDGKIDPEEWNEFISRNPSILKNMTIPYLKDIGTSFPSFVLRSDPED* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0175 207 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Vvi2g0175 207 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Vvi2g0175 207 SMART efh_1 68 96 IPR002048 GO:0005509
Vvi2g0175 207 SMART efh_1 149 177 IPR002048 GO:0005509
Vvi2g0175 207 SMART efh_1 105 133 IPR002048 GO:0005509
Vvi2g0175 207 Gene3D - 16 207 - -
Vvi2g0175 207 CDD EFh 105 175 IPR002048 GO:0005509
Vvi2g0175 207 Pfam EF hand 70 91 IPR002048 GO:0005509
Vvi2g0175 207 FunFam calcineurin B-like protein 3 14 207 - -
Vvi2g0175 207 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Vvi2g0175 207 PRINTS Recoverin family signature 165 185 - -
Vvi2g0175 207 PRINTS Recoverin family signature 119 137 - -
Vvi2g0175 207 PRINTS Recoverin family signature 72 93 - -
Vvi2g0175 207 SUPERFAMILY EF-hand 19 199 IPR011992 -
Vvi2g0175 207 PANTHER CALCINEURIN B 2 206 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vvi2g0175 207 Pfam EF-hand domain pair 103 169 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0175 Vvi-Chr2 1576333 1577770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0175 22 207 EF-hand Containing Proteins AT5G24270 60.215 1.38e-84 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0175 K06268 - vvi:100249564 412.92