Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0173 ATGTCTGTGGCTGCTGTTGCATCGAGTCCCATTCGCGGTGAATCGGTACATTCACCGGGTTTTTTCCATGGCCAACCAGAGCCTTGCTCCAGCGAATCAATCCTAGTTTATCTCACTGTCGCCGGTTCTGTGATTCCTCTGCGTGTTTTGGAGTCCGATTCGATAGCGTCAGTGAAATTTAGGATCCAGATATGTCAAGGGTTTGTAGTGAAGAAACAGAAGCTAGTTTTTGGGGGAAGAGAGTTAGCAAGAAACGATTCTCTTGTTAGGGATTACGGTGTCACCAGTGGGAATGTTCTGCATTTGGTTCTTAAGCTATCAGATCTCCTGGCCATCACCGTTAGAACCGCATGTGGGAAGGAATTCGAGTTTCATGTGGATAGATATAGTAATGTTGGGTACCTCAAGCAACGAATTGTAAAAACCAGGAAATGCTTTGTTGATCTTGAGGATCATGAATTTTTCTGCAATGGAAATAAGCTGGATGACCAGGTTCTCATTGATGATATCTGTACCAGTGATCCTATCATTCATCTGTTGGTTCAGAAATCGGCTAAGGTCAGAGCCAAGCCTGTTGACAAAGATTTTGAGCTATCAGTTGTTGCAGAAGATAGAAATGAAGGGACAAGAGATGGAGCCAATGAAGGAGAGAATCGATCTGAGGAGCAGCTTCAGGTTGTGGAGAAGGAGCCACCAGATAGAGATTTCTGGTTGGAACCTATCATTGTTAATCCGAAGCTCAAGTTCCCTTCATTTATTTGGGATTTGATCAACTCCACATTTGATGGATTGGACAGTGGGAACCACCCAATCTTATCGTCTGAGGGAACCGGAGGAACTTATTTCATGCAAGATTCGTTGGGTCTCAAGTATGTTTCTGTTTTCAAGCCCATGGATGAGGAGCCCATGGCTGTTAATAATCCTAGAGGGTTGCCTGCATCCTCAAATGGTGAAGGATTGAAAAGGGGGACAAGAGTAGGAGAAGGAGCAGTGAGGGAAGTTGCAGCATACGTACTGGATCATCCGAAGAGTGGGCCTCGATTGTTTTCAGATGAAGAGATTGGCTTTGCAGGTGTTCCACCTACTGTAATGGTTCAGTGCTTGCACAAAGGATTGAACCATCCAGAAGGGTATGAGTGCTCAGAAGAGAAGGTCAAGATTGGATCATTGCAGAAGTTCATGAACAGCCATGGAAGTTGCGAGGACATGGGCCCTGGGGCTTTCCCTGTAGAGGAGGTCCATAAGATTAGTGTTTTTGATATAAGAATGGCGAATACAGATAGGCATGCTGGGAATATTCTGGTGAACAAAGAGGGTAAAGATGGCCAGATTGTGCTTATTCCAATTGATCACGGATATTGCTTGCCTGAGAATTTTGAAGATTGCACTTTTGATTGGCTTTACTGGCCACAAGCCCGCCAGCCTTTCTCCCTGGACACCATTGACTACATAAACTCACTGGATGCTGAGCAAGATATCGCACTTCTGAAATTCTGTGGTTGGGAGCTTTCCCTTGAATGTGCCCGCACGCTTCGCATCTCCACCATGCTTCTGAAGAAAGGTGCACAGAGGGGTCTTACTCCTTTTGTAATTGGAAGCATCATGTGCAGAGTAACCTTGAACAAGGAATCTGTCATTGAGGAGATTGTTCAGGAAGCCCAGGATTCCTTGCTTCCTGGAATGAGTGAAGCTGCATTTCTTGAGACCATCTCCCAGCTGATTGATACCCGACTTGACAAGCTTATGAAATAA 1752 0.4521 MSVAAVASSPIRGESVHSPGFFHGQPEPCSSESILVYLTVAGSVIPLRVLESDSIASVKFRIQICQGFVVKKQKLVFGGRELARNDSLVRDYGVTSGNVLHLVLKLSDLLAITVRTACGKEFEFHVDRYSNVGYLKQRIVKTRKCFVDLEDHEFFCNGNKLDDQVLIDDICTSDPIIHLLVQKSAKVRAKPVDKDFELSVVAEDRNEGTRDGANEGENRSEEQLQVVEKEPPDRDFWLEPIIVNPKLKFPSFIWDLINSTFDGLDSGNHPILSSEGTGGTYFMQDSLGLKYVSVFKPMDEEPMAVNNPRGLPASSNGEGLKRGTRVGEGAVREVAAYVLDHPKSGPRLFSDEEIGFAGVPPTVMVQCLHKGLNHPEGYECSEEKVKIGSLQKFMNSHGSCEDMGPGAFPVEEVHKISVFDIRMANTDRHAGNILVNKEGKDGQIVLIPIDHGYCLPENFEDCTFDWLYWPQARQPFSLDTIDYINSLDAEQDIALLKFCGWELSLECARTLRISTMLLKKGAQRGLTPFVIGSIMCRVTLNKESVIEEIVQEAQDSLLPGMSEAAFLETISQLIDTRLDKLMK* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0173 583 MobiDBLite consensus disorder prediction 205 228 - -
Vvi2g0173 583 ProSiteProfiles Ubiquitin domain profile. 110 169 IPR000626 GO:0005515
Vvi2g0173 583 SUPERFAMILY Ubiquitin-like 38 107 IPR029071 -
Vvi2g0173 583 Gene3D - 26 108 - -
Vvi2g0173 583 SUPERFAMILY Protein kinase-like (PK-like) 418 582 IPR011009 -
Vvi2g0173 583 Pfam Ubiquitin family 41 106 IPR000626 GO:0005515
Vvi2g0173 583 Pfam Phosphatidylinositol 3- and 4-kinase 276 530 IPR000403 -
Vvi2g0173 583 SUPERFAMILY Ubiquitin-like 105 181 IPR029071 -
Vvi2g0173 583 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 267 565 IPR000403 -
Vvi2g0173 583 SMART ubq_7 110 182 IPR000626 GO:0005515
Vvi2g0173 583 SMART ubq_7 34 105 IPR000626 GO:0005515
Vvi2g0173 583 Gene3D - 378 583 - -
Vvi2g0173 583 ProSiteProfiles Ubiquitin domain profile. 32 105 IPR000626 GO:0005515
Vvi2g0173 583 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 43 556 IPR044571 -
Vvi2g0173 583 CDD Ubl_ubiquitin_like 112 180 - -
Vvi2g0173 583 Gene3D - 109 191 - -
Vvi2g0173 583 FunFam Phosphatidylinositol 4-kinase gamma 4 31 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0173 Vvi-Chr2 1560320 1562572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0173 1 580 Acyl Lipid Metabolism Gene Families AT5G24240 59.380 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0173 - - vvi:100249570 1170.99