Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0164 ATGACTCTGAACTTGACTTCGCCATGGCTCTCTCGCTTCTCTCGCCCCTCGCCTCACGTCTCCGTTCCCGAAATCTCCACCTTCAGAACCCTCACCTTCTTCGTTTCTCCCACTTCCAAGTCCTTCAGAACCAAAGCTTCCGAAAACGACGTCGCACGCGCCTCCGCTTCGAAGCTCTTGGACGATGAGCTGCTGAGTCGTGTTTCCCGTGCCAGAGACGCCGATGAAGCGCTGGAGATGATCGCGGAGAGGTGGGAGAGAAGTGGTGGCGTTGTGGACACTGCCGATTGCTGTTCCATCATATCCGCCGCCCTTGATCGGAACAATGCCGACCTGGCCTTGTCGGTTTTCTACTCCATGCGTTCGAGCTTCGATCAAGTTGCTAGTGGAAGTAGTGCCCTCATTGAGAGATGGAAGTGGTCTAGGCCGGATGTGCGTGTCTACACTTCATTAGTTAGGGGTCTTGCAGCGTCATTGAGAGTTTCAGAAGCTCTTAGGATGATTGCTGATGTATGTAGAGTAGGAGTATCCCCTGGCGAAGAGGTCCCTTTTGGTAAACTTGTGAGATGTCCAAGTTGTATGATTGCTGTTGCTGTTGCACAACCTCAACATGGCATTCAGATAGTATCTTGTTCGAAGTGCCGCTACCAATATGAGCTTGTTTCTGGTGACATAGCTAGTATTGAGTCAGAGGAAATCAGCATGGATGTTCCAGCATGGAAAAGGGGGCTAAGATTCCTGCAAATAATGAAGGAAAGCATTCCTGCTGCTGTTCACTCCATTGTGGTCCAGACACCTTCTGGAATGGCACGTACACACAGGTTTGCTACTAAAACAGTTGATCTCCCTGCCCAAGAAGGAGAAAGAGTTACCATTGCTCTAGCAGCTCCATCAAATGTTTATCGAGAGATAGGTCCTTTTAAAGTTAGTCCAAAAGCACCCAACTTCTACCCTGGAGAGCCTATGTGCCTAACAAACCACAAAGATGGTCGGGAATCACTACTAGTAAGAGCCCCCAGAAAAGATGGAAGCTCATCCTTACTTAATCCCTCTATTCTCTTTCCGCTTCTTGTTGTGCTGGCCGCTGGAGATGCTGCCTCTGGAATTATTGATCCCAGTTTGCCTCAGTTCCTTTCAGTTGCTGCTGTTGGATCTCTTGCTGTTGGAACTACTTTAAACACTCTGGTTTTCCCTCAAATGAATCGGCTTCCTCAGAGGACGGTGGATACAATCGCTATCAAGCAGCAACTTTTATCTCAATATGATATGCTTCAGTCTCGCATCAAGGACCTCAAAGGAGCTGCTGAAAAAGAGGTGTGGATGTTAGCTCGGATGTGCCAATTGGAGAACAAAATTCTTGCTATTGGAGAGCCTTCTTATCGTGCTCGGAAAAGTAGAGTGAAGAAGGTGCGTGAAGGCTTGGAAAATTCCCTCAAGGGGCGGATTGAATTGATCGACAGTTACGCTAGAATTTCTTCAATGATTGAGATTGAAGTAGAAATGGCTTCTGATGTTCTTGCTGCCGAAGCAGCAAGCAATGTGGAGAGTATTGCTGAACAGATACAGCAAATCATGGAGCTTGAAAATCTTGAAGAGAGATGGAGACAAGTAGCAGAGGCAAACGATGAGGTGGAAAGGCTTCTTAGTTCTGAACTCATTCCCACGGAGCAGGTGTAG 1677 0.4776 MTLNLTSPWLSRFSRPSPHVSVPEISTFRTLTFFVSPTSKSFRTKASENDVARASASKLLDDELLSRVSRARDADEALEMIAERWERSGGVVDTADCCSIISAALDRNNADLALSVFYSMRSSFDQVASGSSALIERWKWSRPDVRVYTSLVRGLAASLRVSEALRMIADVCRVGVSPGEEVPFGKLVRCPSCMIAVAVAQPQHGIQIVSCSKCRYQYELVSGDIASIESEEISMDVPAWKRGLRFLQIMKESIPAAVHSIVVQTPSGMARTHRFATKTVDLPAQEGERVTIALAAPSNVYREIGPFKVSPKAPNFYPGEPMCLTNHKDGRESLLVRAPRKDGSSSLLNPSILFPLLVVLAAGDAASGIIDPSLPQFLSVAAVGSLAVGTTLNTLVFPQMNRLPQRTVDTIAIKQQLLSQYDMLQSRIKDLKGAAEKEVWMLARMCQLENKILAIGEPSYRARKSRVKKVREGLENSLKGRIELIDSYARISSMIEIEVEMASDVLAAEAASNVESIAEQIQQIMELENLEERWRQVAEANDEVERLLSSELIPTEQV* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0164 558 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 40 557 - -
Vvi2g0164 558 Coils Coil 517 547 - -
Vvi2g0164 558 Gene3D Tetratricopeptide repeat domain 35 192 IPR011990 GO:0005515
Vvi2g0164 558 Coils Coil 414 434 - -
Vvi2g0164 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0164 - - vvi:100246151 1073.92