Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0162 ATGAGCTCTCAGATCTGCAGGTCGGCTTCCAGGGCTGCTAGGTCTCTGCTTTCGGCTTCGAAGAGCTCGAATCTCTTGGCTGAAGGGCGAGCTGTAGCAGCAGTGGCAGCACTTTCATCTAGAGGAAAACCATTTCTATCATCATTTGGGAATGCTGGTTCGGGAAATGCATACAGGGGATGGCTTTCAAGTGTCCTTGCCCTTCCTGCAGCAGCCTACATGATGCAGGAGCAGGAGTTGCATGCAACAGAGATGGAGCGCACTTTCATTGCAATCAAGCCTGATGGAGTCCAGAGAGGGCTGATTGCAGAAATCTTATCACGGTTTGAGCGAAAGGGATTTAAACTCGTGGCTATTAAAATAGTGGTTCCCTCAAAGGACTTTGCCCAGAAGCATTATCATGATCTCAAGGAAAGACCTTTCTTCAATGGTCTGTGCGACTTCCTCAGCTCTGGCCCTGTTGTTGCAATGGTCTGGGAAGGCGAGGGTGTGATAAAATATGGCCGAAAACTAATTGGAGCAACGGATCCACAGAAATCTGAGCCAGGAACTATCAGAGGTGACCTAGCTGTTGTTGTAGGAAGAAATATCATCCATGGGAGCGATGGCCCAGAGACTGCAAAGGATGAAATTAACTTATGGTTTAAACCAGAGGAGTTGGTTAATTACAGTAGCAATGCAGAGAAATGGATCTATGGAGTCAACTGA 708 0.4746 MSSQICRSASRAARSLLSASKSSNLLAEGRAVAAVAALSSRGKPFLSSFGNAGSGNAYRGWLSSVLALPAAAYMMQEQELHATEMERTFIAIKPDGVQRGLIAEILSRFERKGFKLVAIKIVVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVNYSSNAEKWIYGVN* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0162 235 ProSitePatterns Nucleoside diphosphate kinases active site. 196 204 IPR023005 -
Vvi2g0162 235 PRINTS Nucleoside diphosphate kinase signature 132 151 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi2g0162 235 PRINTS Nucleoside diphosphate kinase signature 173 189 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi2g0162 235 PRINTS Nucleoside diphosphate kinase signature 152 169 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi2g0162 235 PRINTS Nucleoside diphosphate kinase signature 196 215 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi2g0162 235 PRINTS Nucleoside diphosphate kinase signature 88 110 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi2g0162 235 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 77 234 - -
Vvi2g0162 235 SUPERFAMILY Nucleoside diphosphate kinase, NDK 84 232 IPR036850 -
Vvi2g0162 235 CDD NDPk_I 86 215 - -
Vvi2g0162 235 SMART ndk_5 85 222 IPR034907 -
Vvi2g0162 235 Pfam Nucleoside diphosphate kinase 86 219 IPR034907 -
Vvi2g0162 235 Gene3D - 76 233 IPR036850 -
Vvi2g0162 235 FunFam Nucleoside diphosphate kinase 81 233 - -
Vvi2g0162 235 Hamap Nucleoside diphosphate kinase [ndk]. 85 220 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0162 Vvi-Chr2 1454036 1457685 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0162 K00940 - vvi:100263310 422.165