Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0155 ATGGCGGATGTGTTCGAAGAGGAAGCGGAGCAGACGGTTTCGATCCAGGAGTACCTCAAGGACGTTGAGGACCAAGAGTTGGAAGCAGACTTGGTTTTGGGTGGTGATGAGGGCAAGGAATGCACCTATATCAAGGGTTATATGAAGAGGCAGGCAATTTTTTCATGTTTGACTTGCACTATGGATGGGAATGCAGGGGTTTGCACTGCTTGTAGTTTGTCTTGCCATGATGGCCATGAGATTGTGGAGTTGTGGACCAAGAGAAACTTTAGATGTGATTGTGGAAACTCCAAATTTGGGGAATTCTTCTGCAAGCTTTTCCCAAATAAGGATATAGAAAATGTAGAGAATTCATACAACCATAACTTCAAAGGTTCATACTGCACCTGTGGTCGCCCTTATCCTGATCCAGACATTGAAGAACAAGAAGAGATGATACAGTGCTGTATCTGTGAGGACTGGTTCCATGAGGAGCATCTTGGCCTTGAGTCTTCTGATGAGATTCCAAGAGACGAGGAAGGAGAGCCTCTATATGAGGATTTTATATGCCAGACCTGCTCAGGAGTCTTTTCTTTCTTGACCCTGTATCCTAAAAGCATTTGGGCTGGTGTTAGGCAGCATGATGCTACAGTGAATAATAACAAGGAAAAAGATGTGTTTGAAGACCCACCTTCAGTTTGTGGGTCCTCTCAGAAGCTAGAGAATGATCCTTATTCTCACAACTCCCAGCAAATGGATCATGCTATCACTAATACTGTTTCTGAAAATGTTCCTGGAGAAAATACTGAGAAAAATGAGGGTTCAAGTCAGGTTATTCAAGATGCTAGTCCAAGTAGCAGCACATGTGTTATTGGAGTTGATCTGTTGGTAGCTCCACCAGTTTTTGACGGGAGTAAGCCAATGTTTCTCTCAAAGAACTGGAGGGATATCCTATGCAGATGTGAAAAGTGTGTAGATTTTTATACCCAAAAGTGCATCAATTTTCTGCTTGACAAGGAGGACTCAATTGTGGAGTATGAGAAAATGGCAAAGCAGAAGAGGGAGGAAAAGTTGCATCAACAGGAGGGGGTTGAATTAAATCTTCTGGATAAACTTGGTCATGTAGGGAAAATGGAGTTTCTGAATGGTGTTGCAGACATGAAGAACGAGATTCATGCTTTCCTGGAGTCCTTTGACCCATCAAAGCCTATAACGTCTGCTGATGTCCACCAGGTTTTTGAGAATCTTGCAAAGAAGCGCCGGCGTGTGTAG 1251 0.4333 MADVFEEEAEQTVSIQEYLKDVEDQELEADLVLGGDEGKECTYIKGYMKRQAIFSCLTCTMDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPNKDIENVENSYNHNFKGSYCTCGRPYPDPDIEEQEEMIQCCICEDWFHEEHLGLESSDEIPRDEEGEPLYEDFICQTCSGVFSFLTLYPKSIWAGVRQHDATVNNNKEKDVFEDPPSVCGSSQKLENDPYSHNSQQMDHAITNTVSENVPGENTEKNEGSSQVIQDASPSSSTCVIGVDLLVAPPVFDGSKPMFLSKNWRDILCRCEKCVDFYTQKCINFLLDKEDSIVEYEKMAKQKREEKLHQQEGVELNLLDKLGHVGKMEFLNGVADMKNEIHAFLESFDPSKPITSADVHQVFENLAKKRRRV* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0155 416 CDD UBR-box_UBR7 40 108 IPR047506 -
Vvi2g0155 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7 7 415 IPR040204 GO:0008270|GO:0061630
Vvi2g0155 416 SUPERFAMILY FYVE/PHD zinc finger 114 201 IPR011011 -
Vvi2g0155 416 SMART PHD_3 127 187 IPR001965 -
Vvi2g0155 416 Pfam Putative zinc finger in N-recognin (UBR box) 41 105 IPR003126 GO:0008270
Vvi2g0155 416 FunFam Putative E3 ubiquitin-protein ligase UBR7 122 189 - -
Vvi2g0155 416 MobiDBLite consensus disorder prediction 228 242 - -
Vvi2g0155 416 CDD PHD_UBR7 127 186 - -
Vvi2g0155 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 188 IPR013083 -
Vvi2g0155 416 ProSiteProfiles Zinc finger UBR-type profile. 39 109 IPR003126 GO:0008270
Vvi2g0155 416 SMART push_1 39 108 IPR003126 GO:0008270
Vvi2g0155 416 Coils Coil 329 349 - -
Vvi2g0155 416 MobiDBLite consensus disorder prediction 214 242 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0155 K11979 - vvi:100242771 871.692