Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0149 ATGGAGAAGCTTCTGAGGCTTATTACCATGGCTCCTCTGTTTCTGCAAATGCTGCTTGTTTCTTTCCCTTTTGCTTTTGCTGGCCATGACTATGGCCAAGCTTTGACCAAGGGCATTCTCTTCTTTGAAGCTCAGAGATCTGGGTACCTTCCCAGTAACCAGAGAGTGAAGTGGAGAGCTGATTCTGGTTTACATGATGGAAAGGCTAGTGGGGTGGATCTGGTGGGAGGATATTATGATGCAGGTGACAATGTGAAGTTTGGCCTACCCATGGCATTCACCGTTACAATGATGTCATGGAGCATAGTGGAGTATGGGAAGCAAATGGCTGCAAATGGAGAGCTGGGTCATGCCATGGAAGCTGTGAAGTGGGGCACTGACTACCTCATCAAAGCTCACCCCCACCCCGATGTCCTCTACGGAGAGGTGGGAGATGGAAACACTGATCACTTCTGTTGGCAAAGGCCAGAGGACATGACCACAGATCGGCGGGCATATAAGATCGATCCCAGCAACCCAGGGTCCGACCTTGCCGGAGAGACCGCCGCCGCCATGGCCGCCGCCTCTATTGTCTTCCGCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTGATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAGTACTACTTGAGCTACCTTGGAAACAATGGCCAGTCGCTCGGAGGAACCGGCTGGTCTATGACAGAGTTCGGGTGGGACGCCAAGTATGCTGGGGTTCAGGTTCTTGTGGCTAAGATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATATCAGCAGAAGGCTGAGTTTTTCATGTGTTCATGCCTGGGAAAGGGCACTAGGAACATTCAGAAGACTCCAGGAGGCCTTCTTTACAGGCAGAGATGGAACAATATGCAATTCGTGACAAGCGCCTCTTTCCTTGTTACAGTGTACTCTGACTATCTTGCTTCGGCTGGTAAAAACTTGAACTGTGCTGCTGGCAGTGTCTCACCATCTGGGCTTATTTCATTTGCAAAATCTCAGGTGGATTATATTCTTGGAGACAACCCAAGAGCCACGAGTTACATGGTGGGGTATGGAAACAACTATCCTCGACAAGTCCACCACCGAGGTTCCTCGATTGTGTCTATTAAGGTTAACCCTTCATTTGTCAGCTGCCGAGGAGGCTATGCCACTTGGTTTTCCAGGAAGGGTAGCGATCCTAATCTCCTGACCGGTGCTATAGTTGGTGGCCCTGATGCCTATGACAACTTTGCCGATGAAAGAGACAATTATGAGCAAACAGAGCCTGCTACCTACAACAATGCTCCTCTTATTGGCTTATTGGCTCGACTAAGCGGTGGTCATGGTGGATACAACCAGCTACTTCCAGTGGTTCTTCCAGCTCCCAAGGAGGTTGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAAAGCCAAGGGGAACACTTACAATAGATACTCCACAATTGTGACTAACAAGTCTGCTAAGACTCTGAAGGATCTCGAGCTTACAATATCTAAGCTTTATGGTCCACTCTGGGGCCTCACAAAGTCTGGTGATTCATATGGTTTTCCATCATGGCTCAAAGCCTTAGCTGCTGGGGAGAAGCTTGAGTTTGTTTACATCCATTCTGCGGATCCAGCAGAGGTCTCTGTTTCCAGCTACACGTTGGCATGA 1890 0.4921 MEKLLRLITMAPLFLQMLLVSFPFAFAGHDYGQALTKGILFFEAQRSGYLPSNQRVKWRADSGLHDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIVEYGKQMAANGELGHAMEAVKWGTDYLIKAHPHPDVLYGEVGDGNTDHFCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRRSNPSYANELLTHARQLFEFGDKYRGKYDSSITVAQKYYRSYSGYADELLWAAAWLYQATNNQYYLSYLGNNGQSLGGTGWSMTEFGWDAKYAGVQVLVAKMLMQGKGGRYTSVFQQYQQKAEFFMCSCLGKGTRNIQKTPGGLLYRQRWNNMQFVTSASFLVTVYSDYLASAGKNLNCAAGSVSPSGLISFAKSQVDYILGDNPRATSYMVGYGNNYPRQVHHRGSSIVSIKVNPSFVSCRGGYATWFSRKGSDPNLLTGAIVGGPDAYDNFADERDNYEQTEPATYNNAPLIGLLARLSGGHGGYNQLLPVVLPAPKEVVTQPKSAPTPKVTPAPASTSAEIAIEQKLTTSWKAKGNTYNRYSTIVTNKSAKTLKDLELTISKLYGPLWGLTKSGDSYGFPSWLKALAAGEKLEFVYIHSADPAEVSVSSYTLA* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0149 629 SUPERFAMILY Six-hairpin glycosidases 28 505 IPR008928 GO:0005975
Vvi2g0149 629 Pfam Carbohydrate binding domain CBM49 537 614 IPR019028 GO:0030246
Vvi2g0149 629 Gene3D - 28 496 IPR012341 GO:0005975
Vvi2g0149 629 Pfam Glycosyl hydrolase family 9 31 490 IPR001701 GO:0004553|GO:0005975
Vvi2g0149 629 SMART CBM49_2 537 617 IPR019028 GO:0030246
Vvi2g0149 629 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Vvi2g0149 629 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
Vvi2g0149 629 FunFam Endoglucanase 27 498 - -
Vvi2g0149 629 PANTHER ENDO-1,4-BETA-GLUCANASE 13 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0149 Vvi-Chr2 1331566 1335344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0149 22 629 Glycoside Hydrolase AT1G64390 76.809 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0149 K01179 - vvi:100259874 1276.92