Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0144 ATGTGTCGGTTTGTGGTCTGGATTTTCCTGTGTTTCGCGGCCACTGCGCTGTTTCTGACCCGATTGGTGCTGGCCGGAGATGTGACATGCTCCGGGATAGTGCCGATGCGGCACCGGAACGATGTGATCTCGATAAAAGATTTCGGAGGTGTCGGTGATGGGAAGACGCTGAACACGAAGGCGTTTCGGGCGGCGATATATCGGATTGAGCATCTGAGGAGGAGAGGGGGCACGCTGCTTTATATACCTCCTGGGGTCTACTTAACGGAGAGCTTTAATCTTACCAGTCATATGACTCTCTACTTGTCTAAAGATGCTGTTATCAGAGCCACCCAGGATACTGGTAGTTGGCCTTTAATTGCTCCCTTGCCATCTTATGGAAGAGGGAGGGAGCTGCCTGGAGGGAGGTATATGAGCTTTATCCATGCAGATGGTGTTCATGATGTGATAATCACTGGTGAGAATGGGACAATTGATGGCCAAGGTGAAGTCTGGTGGAACATGTGGAGGCAGAGAACCCTTCAATTCACTAGGCCGAATCTCATTGAATTAATAAATTCCAGAAACATTATTATTTCCAATGTGATTTTTAGGGACTCTCCCTTCTGGAACATTCATCCTGTTTATTGCAGAAATGTCGTTGTTCAATTTGTCACCATATTGGCTCCACATGACTCTCCCAACACGGATGGTATTGATCCAGATTCAAGCTCCAATGTCTGCATAGAGGACTCCTACATTTCTACTGGGGATGACCTTGTAGCTGTGAAAAGTGGGTGGGATGAGTATGGAATTGCTTATGGACGCCCTAGCTCCGGCATCACCATCCGGAGGATAACAGGATCATCCCCATTTGCTGGAATAGCAGTTGGGAGTGAAACCTCCGGTGGCGTGCAGAATGTCTTTGCTGAGCACATAAACCTTTACAACATGGGTGTCGGCATTCATCTGAAGACCAACATTGGCAGGGGAGGGGTCATAAGAAATATCACAGTGTCCAATGTATACATGGAAAAGGCTCGAACGGGGATAAAAATCGCAGGAGACGTTGGCGACCACCCTGATGACAACTTCAACCCAAATGCCCTCCCAGTTGTCAAGGGTGTGGTGATAAGGGATGTTTGGGGCCTCGACGTCCTGCAGCCGGGTTCAATAATAGGCCTGAAGAACTCCCCTTTCACCGGAATCTGCCTTTCTAAAATCAACCTTCATGGTAAAATCAAACCAGGAACTGCTCCTTGGAAGTGCTCTGATGTAAGTGGAGCTGCCGTTGGCGTAAGCCCCTGGCCATGCTCTGAACTAACCAGTCCCGGCCAAACTGGTTCATGTTCCAGTTTCATATGA 1344 0.4859 MCRFVVWIFLCFAATALFLTRLVLAGDVTCSGIVPMRHRNDVISIKDFGGVGDGKTLNTKAFRAAIYRIEHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLSKDAVIRATQDTGSWPLIAPLPSYGRGRELPGGRYMSFIHADGVHDVIITGENGTIDGQGEVWWNMWRQRTLQFTRPNLIELINSRNIIISNVIFRDSPFWNIHPVYCRNVVVQFVTILAPHDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSGITIRRITGSSPFAGIAVGSETSGGVQNVFAEHINLYNMGVGIHLKTNIGRGGVIRNITVSNVYMEKARTGIKIAGDVGDHPDDNFNPNALPVVKGVVIRDVWGLDVLQPGSIIGLKNSPFTGICLSKINLHGKIKPGTAPWKCSDVSGAAVGVSPWPCSELTSPGQTGSCSSFI* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0144 447 PANTHER PECTIN LYASE-RELATED 36 439 - -
Vvi2g0144 447 SUPERFAMILY Pectin lyase-like 34 434 IPR011050 -
Vvi2g0144 447 SMART pbh1 271 292 IPR006626 -
Vvi2g0144 447 SMART pbh1 298 319 IPR006626 -
Vvi2g0144 447 SMART pbh1 210 236 IPR006626 -
Vvi2g0144 447 SMART pbh1 327 348 IPR006626 -
Vvi2g0144 447 SMART pbh1 237 269 IPR006626 -
Vvi2g0144 447 Gene3D - 28 426 IPR012334 -
Vvi2g0144 447 Pfam Glycosyl hydrolases family 28 139 420 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0144 Vvi-Chr2 1253297 1258117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0144 1 445 Glycoside Hydrolase AT4G23820 74.664 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0144 - - vvi:100250089 907.131