Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0127 ATGGCATCGGAAGATGTGAAGACAAGCGAGGCTGCGGTTTCGAGGATCGTGAATCTGGCCGAAGAAGCGAAGCTCGCGAGGGAAGGAGTGAAGGCGCCGAGTCACGCGCTTCTCAGCGTCTGCAAGTCTCTCGTGGCCGGAGGAGTCGCCGGAGGAGTGTCACGCACTGCTGTTGCTCCATTGGAACGGTTAAAAATTTTGCTTCAGGTCCAAAATCCTCATACTATAAAATATAACGGAACCATCCAGGGCTTGAAATATATATGGAAATCTGAGGGTTTCCGGGGACTATTTAAAGGCAATGGAACCAATTGTGCCCGCATTGTACCAAATTCAGCAGTCAAGTTCTATAGTTATGAGCAAGCATCCAAGGGAATTTTATGGCTTTACCGGCAGCAACCTGGCAATGAAAATGCAGAACTCACTCCTCTTTTACGCCTTGGTGCTGGAGCATGTGCAGGAATCATTGCCATGTCAGCGACCTACCCTATGGACATGGTACGAGGGCGATTAACTGTCCAGACAGAGAAGTCTCCTCGCCAGTATAGAGGAATCTTCCATGCTCTTTCAACAGTCCTCAGGGAAGAAGGTGCCCGGGCTTTGTACAAAGGCTGGCTTCCTTCTGTTATAGGAGTTATACCATACGTGGGTCTCAACTTTGCTGTGTACGAATCCTTAAAAGATTGGTTGATGAAAGCAAAACCATTTGGGTTAGTTGAGGACTCCGAGTTGGGTGTGACGACAAGGCTCGCATGTGGGGCTGCTGCTGGAACCGTTGGCCAGACAGTTGCTTACCCTCTTGATGTCATCCGCCGCAGAATGCAGATGGTGGGCTGGAAAGATGCTGCTTCAGTCGTCACTGGTGATGGTAGGGGCAAGGCACCCCTTGAATACACGGGGATGGTTGATGCGTTCAGGAAAACAGTTCGGCATGAGGGATTTGGGGCCTTGTACAAGGGTTTGGTCCCCAATTCAGTAAAGGTGGTCCCATCCATAGCAATTGCATTTGTGACATACGAGATGGTGAAGGACATTCTTGGAGTTGAGATGAGGATTTCTGACTGA 1065 0.4967 MASEDVKTSEAAVSRIVNLAEEAKLAREGVKAPSHALLSVCKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHTIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIVPNSAVKFYSYEQASKGILWLYRQQPGNENAELTPLLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKSPRQYRGIFHALSTVLREEGARALYKGWLPSVIGVIPYVGLNFAVYESLKDWLMKAKPFGLVEDSELGVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVTGDGRGKAPLEYTGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEMRISD* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0127 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 141 229 IPR018108 -
Vvi2g0127 354 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Vvi2g0127 354 PRINTS Mitochondrial carrier protein signature 202 220 IPR002067 GO:0055085
Vvi2g0127 354 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
Vvi2g0127 354 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Vvi2g0127 354 PRINTS Mitochondrial carrier protein signature 156 174 IPR002067 GO:0055085
Vvi2g0127 354 PRINTS Mitochondrial carrier protein signature 100 120 IPR002067 GO:0055085
Vvi2g0127 354 FunFam Mitochondrial substrate carrier 36 348 - -
Vvi2g0127 354 SUPERFAMILY Mitochondrial carrier 38 341 IPR023395 -
Vvi2g0127 354 Gene3D Mitochondrial carrier domain 35 348 IPR023395 -
Vvi2g0127 354 PANTHER SOLUTE CARRIER FAMILY 25 37 348 - -
Vvi2g0127 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Vvi2g0127 354 Pfam Mitochondrial carrier protein 243 346 IPR018108 -
Vvi2g0127 354 Pfam Mitochondrial carrier protein 142 233 IPR018108 -
Vvi2g0127 354 Pfam Mitochondrial carrier protein 39 124 IPR018108 -
Vvi2g0127 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 345 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0127 Vvi-Chr2 1137921 1144425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0127 44 349 EF-hand Containing Proteins AT5G51050 39.414 1.05e-67 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0127 K14684 - vvi:100260448 684.871