Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0121 ATGGATGATGAAGTGACCACAATTGATGTGGCGGAGGGCTCTCACCTCCAAAGAAAAGAGAGTGAGTACTTGCTGAAGCCTGATAGCAGCAGTATGTTGAATTCAAGGGAAATGGTTATACCTGGTGAAGGTGATTATCCCGAGAGCTCACCCCAGGAATTCACAGGTATTTTAGAGGGTAAGAATGTAAATAAAACTGTAAGTTCTTTAGCTGCAGCAGAACATACATGTAGTGGCCATCTCCCTGTGGATGATGCTGGGATCATGATTGAGGAGTTAACACTGAGAAATTACAATGGAGCAAACTTAGCTGTCGTTGGTCCCTCTAACAATAGAGATAGAATGCAGATCAGGCAGAACCAGTGGCAACATATTCATCTGCTAGCGGGTGGACAAGGAACTGGGAGTTCAGTCCGAGATAGTGTACGTAGGGACAATGGTCAGCCAATGTCAAGTGCATGGGAGGATGTGGGATACTCATCTTTCCCTGAATTTTTAGCTCAAAAACAATCTAGTCATGATCACAATGAAGTCAGGGAACAAGTTACAAATTGTGAAAATAGAGCTGTTTCAGGTGATACATTATCTCCTGGTGGGATCCGGACAAAGATTCTATCTAAATCTGGGTTTTCGGAGTTTTTTATTAAAAATTCATTGAAGGGTAAAGGTGTCATATGTAGAGGCCCAGCACGTGATGGCTTTGGTGTTGAGATTAGAGACTCAAATATTACAAAGGCTGCTGTTGATACTACTGTAGCTTCTGATTCATCGCTGAGTCCAAGTGCCAAAACTGCTACGCCATCTCCCCGTGGTCTTGCTCCGACTCGAGTCAAGAGTGTCATATGTACGGACACAGTATATGATGGCTTTGGGGATGAGTTTAGAGACCAAAACAATACAAAGGCTATTGTTGATAGTCAGGTAGCTTCTGATTTGTCACTGAGCTCAAGCGCAAAAACTGCTGTACCATCTGCCCATGGTAGTGCTGGGACTGGGCCTTGTCATGGCCCCCTTCCTGATTCTTCTCATGATGGAGTCAATTTGAGGGAATGGTTGAGAGCTGGGCACCGTAAAATAAATAAAGTTGAGAGCTTGTATATATTTAGGCAGATTGTGGATCTGGTGGATGTTTCGCACTCCCAAGGTGTTGCAATGCAGAACTTACGACCATCTTGTTTTAAGTTGTTGCCATCAAATCAGGTTGCATACCTTGGATCTTCTGTCCAAAGAGAAATGCTAGAGAATGCTGTGGATCAGGATGTTTCCTTGAAGAATCTCCTGAGTGGAAAAAGGTCATTAGAAAAAGGTATGTTTCCCTCGATTAGTTTAAGTGGAAAGAAGCAAAAGTTCAGTGAAAGCATGAACACTTTTAGACAGTGGCCACAGTTTTCAGCAAGATATGGCATCAAACTTGAAACTGCAAATAAAAGTGGCATCAATATTACTCGTGCACAAGATTTGGGTAGTAAATTCAATGAAGAACATAACCAAAATACTGAATATAAGATTCAACGAAAATCCAGCAGCCAAAATGTTTCTTATACATCTCAACAGCTGTTGATTTCTGCAAGTGATCGGTTAGAAGAGAAGTGGTATACTAGTCCAATGGAGCTCAGTGAGGGGGTCTGCACATTTTCATCTAATATCTACTGTCTGGGTGTTCTTTTGTTCGAGCTACTTGGATCTTTTGATTCTGAAAAAGCACGTGCTGCAGCAGTGTCAGATCTACGTCACAGAATTCTTCCCCCCAACTTTCTGTCAGAAAATCCCAAGGAAGCAGGTTTCTGTCTTTGGCTACTTCATCCTGAATCCTCATCACGTCCGACAACCAGAGAAATCCTACAATCTGAAGTAATTAGTGGACTTCAAGAGGTACATGAAGGTGACTTATCTTCATCTATTGAGCAAGAAGATGTTGATTCAGAACTCTTACTGCATTTTCTTATATTAATGAAAGAGCAAAAGCACAAACATGCCACCAAGTTAGTGGAAGACATTAGGTGCTTAGAAGCAGATATTGAAGAGGTTGAGAGGAGGACCTCTCCTAAAAAATCTTCGCTCCTTTCTTGCTCACATAAAACTGCAATATGTGCAAGTGAAAAAAGGTTCATTCAAGAAGGGACCCCAAGTGCAGAAGCATGTTCTGAATTTCCTCACTTTTCTGATACATATGGATTAAGGTTGATGAGGAATATCAGTCAACTTGAAAGTGCCTACTTCTCCATGAGATCCAAAATCCAGCTTCCTGAAACTGATGCTTTAACACGTTCAGATAAGGATTTATTGCTAAATCGTGAGAACTTTTATCAGGCACAAAAGAATGGAGAAGACCTGAAAGTCACTGATCGCCTGGGAACCTTCTTCAATGGGTTGTGCAAGTATGCTCGTTATAGTAAGTTTGAAGTTCGTGGGATATTAAGAAATGGTGATTTCATCAATTCTGCAAATGTAATTTGCTCTTTGAGTTTTGACCGGGATGAGGACTATTTGGCTGCTGCTGGGGTATCAAAGAAAATAAAGATATTTGAGTTTCATGCTCTCTTTAATGATTCTGTTGACATTCATTACCCGGTAATTGAGATGACCAACAAATCAAAGCTTAGCTGCATTTGCTGGAACAACTACATCAAGAATTATCTGGCTTCAACTGACTATGATGGTGTAGTTAAGTTATGGGATGCGAGTACTGGTCAAGGCCTTTCTCAATACATTGATCACCAAAAAAGGGCTTGGTCTGTTGACTTCTCTCGAGTGGATCCCAAAAAATTAGCCAGTGGAAGTGATGATTGTTCCGTAAAACTGTGGAGCATTAATGAGAAAAACTGTTTAGGCACGATAAGGAACATTGCAAATGTCTGCTGCGTTCAGTTCTCTGCTCACTCGTCTCATTTGCTAGCCTTCGGGTCTGCGGATTACAAAACCTACTGCTATGATCTGCGGAATGCTAAAAGCCCCTGGTGTATATTGGCCGGCCATGACAAAGCTGTGAGCTATGTGAAATTCTTGGATGCTGAAACCCTCGTTTCTGCATCCACTGACAATTCTCTAAAGATTTGGGATCTCAACCAAACCAGTTCTACTGGTTTGTCCATGAATGCTTGCAGCTTAACCCTCAGTGGGCATACTAATGAGAAGGTTGGTTTCTCCGTGCTAGAATCTGGAACTTTGTGGGTCTGTCTGTTGCGGATGGATATGTCACATGTGGTTCAGAAACCAATGAGGTTTATGCTTACCACCGATCTCTGCCCATGCCAATCACCTCTCACAAGTTTGGATCCATAG 3282 0.419 MDDEVTTIDVAEGSHLQRKESEYLLKPDSSSMLNSREMVIPGEGDYPESSPQEFTGILEGKNVNKTVSSLAAAEHTCSGHLPVDDAGIMIEELTLRNYNGANLAVVGPSNNRDRMQIRQNQWQHIHLLAGGQGTGSSVRDSVRRDNGQPMSSAWEDVGYSSFPEFLAQKQSSHDHNEVREQVTNCENRAVSGDTLSPGGIRTKILSKSGFSEFFIKNSLKGKGVICRGPARDGFGVEIRDSNITKAAVDTTVASDSSLSPSAKTATPSPRGLAPTRVKSVICTDTVYDGFGDEFRDQNNTKAIVDSQVASDLSLSSSAKTAVPSAHGSAGTGPCHGPLPDSSHDGVNLREWLRAGHRKINKVESLYIFRQIVDLVDVSHSQGVAMQNLRPSCFKLLPSNQVAYLGSSVQREMLENAVDQDVSLKNLLSGKRSLEKGMFPSISLSGKKQKFSESMNTFRQWPQFSARYGIKLETANKSGINITRAQDLGSKFNEEHNQNTEYKIQRKSSSQNVSYTSQQLLISASDRLEEKWYTSPMELSEGVCTFSSNIYCLGVLLFELLGSFDSEKARAAAVSDLRHRILPPNFLSENPKEAGFCLWLLHPESSSRPTTREILQSEVISGLQEVHEGDLSSSIEQEDVDSELLLHFLILMKEQKHKHATKLVEDIRCLEADIEEVERRTSPKKSSLLSCSHKTAICASEKRFIQEGTPSAEACSEFPHFSDTYGLRLMRNISQLESAYFSMRSKIQLPETDALTRSDKDLLLNRENFYQAQKNGEDLKVTDRLGTFFNGLCKYARYSKFEVRGILRNGDFINSANVICSLSFDRDEDYLAAAGVSKKIKIFEFHALFNDSVDIHYPVIEMTNKSKLSCICWNNYIKNYLASTDYDGVVKLWDASTGQGLSQYIDHQKRAWSVDFSRVDPKKLASGSDDCSVKLWSINEKNCLGTIRNIANVCCVQFSAHSSHLLAFGSADYKTYCYDLRNAKSPWCILAGHDKAVSYVKFLDAETLVSASTDNSLKIWDLNQTSSTGLSMNACSLTLSGHTNEKVGFSVLESGTLWVCLLRMDMSHVVQKPMRFMLTTDLCPCQSPLTSLDP* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0121 1093 MobiDBLite consensus disorder prediction 134 148 - -
Vvi2g0121 1093 ProSiteProfiles Trp-Asp (WD) repeats profile. 903 945 IPR001680 GO:0005515
Vvi2g0121 1093 ProSiteProfiles Trp-Asp (WD) repeats profile. 989 1029 IPR001680 GO:0005515
Vvi2g0121 1093 Gene3D Transferase(Phosphotransferase) domain 1 344 629 - -
Vvi2g0121 1093 SUPERFAMILY Protein kinase-like (PK-like) 345 623 IPR011009 -
Vvi2g0121 1093 ProSitePatterns Trp-Asp (WD) repeats signature. 1007 1021 IPR019775 -
Vvi2g0121 1093 Gene3D - 787 1074 IPR015943 GO:0005515
Vvi2g0121 1093 SUPERFAMILY WD40 repeat-like 815 1055 IPR036322 GO:0005515
Vvi2g0121 1093 PRINTS G protein beta WD-40 repeat signature 1007 1021 IPR020472 -
Vvi2g0121 1093 PRINTS G protein beta WD-40 repeat signature 880 894 IPR020472 -
Vvi2g0121 1093 PRINTS G protein beta WD-40 repeat signature 923 937 IPR020472 -
Vvi2g0121 1093 PANTHER PROTEIN SPA1-RELATED 2 2 1051 IPR044630 GO:0009640
Vvi2g0121 1093 ProSitePatterns Trp-Asp (WD) repeats signature. 880 894 IPR019775 -
Vvi2g0121 1093 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 902 IPR001680 GO:0005515
Vvi2g0121 1093 Coils Coil 659 679 - -
Vvi2g0121 1093 MobiDBLite consensus disorder prediction 319 341 - -
Vvi2g0121 1093 MobiDBLite consensus disorder prediction 253 268 - -
Vvi2g0121 1093 Pfam WD domain, G-beta repeat 899 936 IPR001680 GO:0005515
Vvi2g0121 1093 Pfam WD domain, G-beta repeat 988 1020 IPR001680 GO:0005515
Vvi2g0121 1093 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 989 1022 - -
Vvi2g0121 1093 SMART WD40_4 896 936 IPR001680 GO:0005515
Vvi2g0121 1093 SMART WD40_4 854 893 IPR001680 GO:0005515
Vvi2g0121 1093 SMART WD40_4 808 843 IPR001680 GO:0005515
Vvi2g0121 1093 SMART WD40_4 939 978 IPR001680 GO:0005515
Vvi2g0121 1093 SMART WD40_4 982 1020 IPR001680 GO:0005515
Vvi2g0121 1093 MobiDBLite consensus disorder prediction 130 153 - -
Vvi2g0121 1093 MobiDBLite consensus disorder prediction 253 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0121 Vvi-Chr2 1067404 1091154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0121 900 1051 Miscellaneous Gene Families AT5G08390 29.221 7.23e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0121 K16240 - vvi:100257085 2080.45