Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0116 ATGCATCTCGTCAGCTTCCTCATGTTGGCGGCTGTGGCCTGTTTTATGACTGCACCGGCGGCTGCCTTCAGCCACATTGTTGGAGGAAGCTTCGGCTGGAGCACCCCTGGGAACCTCTCCTTCTACGAAGATTGGGCTAAGCCCAGGACCTTCGGCGTTGGCGACAAACTTGTGTTTCCTTTCAGGACGGGGGTGCACAGTGTGGTACAGGTTAGCGAGGAAGAGTTCAAAAATTGCACGCAGAATGACGCGATCGACATGTTTTATAGCGGGCCAACAATTATTGAACTCCCAAAGACAGGGACCTTTTACTACTACTGTGGCGTCGGGACACACTGCGAAGCAGGCCAAAAGGTCAAGGTCACGGTGGTGAACGCCGAGGGCTCAGCTGGCACCCCTATCACACCTAATGCCTCGGTGCCAGCTCCTGCCGATCACAAGTCCTCCGCAAAGGAAGGTTGTGACGTTGGTATGGTTTCAGGAATGCTGGTTTTGCTGCTTTGGGTATTCATATGA 516 0.5368 MHLVSFLMLAAVACFMTAPAAAFSHIVGGSFGWSTPGNLSFYEDWAKPRTFGVGDKLVFPFRTGVHSVVQVSEEEFKNCTQNDAIDMFYSGPTIIELPKTGTFYYYCGVGTHCEAGQKVKVTVVNAEGSAGTPITPNASVPAPADHKSSAKEGCDVGMVSGMLVLLLWVFI* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0116 171 Gene3D - 23 135 IPR008972 -
Vvi2g0116 171 ProSitePatterns Type-1 copper (blue) proteins signature. 101 117 IPR028871 -
Vvi2g0116 171 SUPERFAMILY Cupredoxins 22 124 IPR008972 -
Vvi2g0116 171 Pfam Plastocyanin-like domain 33 117 IPR003245 GO:0009055
Vvi2g0116 171 PANTHER BLUE COPPER PROTEIN 22 136 IPR039391 GO:0009055
Vvi2g0116 171 CDD Stellacyanin 23 123 - -
Vvi2g0116 171 ProSiteProfiles Phytocyanin domain profile. 23 125 IPR003245 GO:0009055
Vvi2g0116 171 FunFam Cupredoxin superfamily protein 22 129 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0116 27 148 Miscellaneous Gene Families AT5G20230 42.276 5.07e-23 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0116 - - vvi:100267380 347.051