Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0114 ATGTTTCATTGGCAAGCAACTATAATGGGTCCTCCTGACAGTCCATATGCTGGTGGAGTGTTTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGTATTTGCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCTCTGGTGCCTGAGATTGCTCACATGTACAAGACAGACAGGAGCAAGTACGAGACAACTGCAAGGAGCTGGACCCAGAAGTATGCAATGGGTTAG 360 0.4389 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0114 119 SUPERFAMILY UBC-like 1 118 IPR016135 -
Vvi2g0114 119 FunFam Ubiquitin-conjugating enzyme E2 D3 1 118 - -
Vvi2g0114 119 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 107 - -
Vvi2g0114 119 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 45 60 IPR023313 -
Vvi2g0114 119 Gene3D Ubiquitin Conjugating Enzyme 1 119 IPR016135 -
Vvi2g0114 119 SMART ubc_7 1 118 - -
Vvi2g0114 119 Pfam Ubiquitin-conjugating enzyme 1 112 IPR000608 -
Vvi2g0114 119 CDD UBCc 1 113 IPR000608 -
Vvi2g0114 119 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 118 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0114 Vvi-Chr2 1022924 1030161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0114 1 85 Miscellaneous Gene Families AT3G17000 36.264 7.67e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0114 K06689 - aof:109840664 256.529