Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0104 ATGGAGCCAAATGAAAAGATGAGACTTTTGCCTCAAGATAAAGCCACACCCAAAGGAATTTTTTTATACCATTTTGTGCAGGCAAGAAGATACAACATGGGTGAGAGTCTCTGGACTGTTTTCTGTGGAAGTACCGGGTGTTCAAGTAAAATTGGAAAGATAAGCAGTTCTGGGTTCCTAGCCATCATCTGTCCATGTTCATGTCTCAATCATATTTTGGTCATTTCTGTAGACATCATCCTCTTGTTCTTATTATTATTTATCTTCATATATAAAGCATCAGCTTTGAAGATATTATCCCCTCAACGGTCTCTATGCTTTTCCACAACGCTAAATTCTGCAGCCTTTCTTAATGGTAGTTTGGGGTTTGTTTATCTGGGTTTGGGGATCTGGATTTTGGGAGAGAAGCTGATTGAAGAGAACACCATTCTACCTCTGCATGGCTGGCTAGTGAATTTATTACAAGGCTTCGCCTGGTTTTTTCTGGGTTTAGCTATGATTTTAGATGTTATATCTTTTCCTGGAGCAATTCTATCGATGTTCTCCACTTTTTCAGGACCGAAATATGCAGGAACTGATTCAGAAATTGATGGTGCTGGCTTCTATACACCGTTGCCTGGTGAAGGAGGCAGTGGTGGTGATAAAATCAATTCAGATGCCAGCTTACCTCCTTTTCAGAAAGCCGGGCTTATTAGTAGACTGTCATTTTGGTGGTTGAATTCGTTGATCAAGAAGGGTAAGGAGAAAACACTTGAGGACAAAGACATTCCACAGCTAAGAAGGGAAGATCGAGCGGAAATGTGTTACTCAATGTTCATGGAACAGCAGAACAAGCAGAAAAACAAGCGGTCATCTCACTCTCCTTCCATTTTGTCAACTATATTGTTGTGGCAGTGGAAACAAATTTTGTTTTCTGGCTTTTATGCATTGATCAAGGTACTGACACTTTCTACTGGCCCTCTGTTTCTTAGAGCCTTCATCCTGGTTGCTGAAGGCAAAGAAGCTTTTGAGTATGAAGGTTATGCACTGACAGGAGGGCTCTTCCTTACTAAATGCTTAGAATCGTTATCAGAGAGGCAATGGTTCTTTCGAACTAGATTGATTGGGCTCCAAGTGAGATCATTTCTATCTGCAGCCATCTATCAGAAGCAGCTTAAGCTCTCAAATGCTGCAAAGGGGTCGTATTCCCCTGGTCAGATCATTAACTTTGTTACCATTGATGCTTACAAAATAGGTGAATACCCGTACTGGTTTCACCAGATATGGTCAACAAGCCTCCAGTTGTGTCTGGCATTGCTTATTATTTACTACTCGGTGGGGCTTGCAACTATAGCAGCTCTGTCTGTAGTAATATTGACTGTAGTTACAAACTCTCCTATGGGAAAGTTACAACACAAGTACCAGAAAATGCTCATGGGAACTCAGGACAAGAGGCTGAAGACTTTCACAGAGGCACTTACAAACATGAAAATTCTGAAGCTGTATGCTTGGGAGACTCATTTCAAGAATGTCATAGAAGGGTTGAGGAAAGAGGAATTCAAGTGGTTATCATCAGTTCTGTCACAGAGAGGGTACAATCTGATTCTGTTTTGGTCCTCTCCCATTGTAGTATCGGCGGTTACTTTCTGGGCATGCTACTTTCTTGGAACTACTCTCTCTGCTACCAATGTTTTCACATTTATGGCAAGTTTACGCCTTGCCCAGGAGCCAATAAGGTTAATCCCTGATGTCATTTCAGCATTCATTGAGGCCAAGGTTTCGTTAGATCGGATTGCAAAGTTTCTTGATGCACCAGAGCTGCAGAACAAACATGTAAGGAAGATGTGTGATGGGAAGGAGCTGGAGGAATCCATTTTTATCAAGAGCAACAGAATTTCATGGGAGGATAACACTACAAGGGCTACGCTAAGGAACATAACTTTGGTGGTTAAGCCTGGGGAAAAGGTAGCAATTTGTGGAGAGGTTGGCTCAGGTAAATCGACACTATTAGCTGCTGTTCTTGGAGAAGTTCCACACGTTAATGGCATAGTTCGAGTTTATGGAAAGATTGCTTACGTCTCTCAGACAGCATGGATTCCAACAGGTACCATACAAGAAAATATTCTGTTTGGGTCTGCTATGGATCCTTACAGATACAGAGAGGTTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTTGGTGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAGAAGCAGAGGGTTCAACTCGCACGCGCATTATATCAGGATGCAGATGTATATCTCCTGGATGATCCATTTAGTGCGGTCGATGCACATACTGCAACCAGTCTATTTAATGAATATGTCATGGGAGCTCTATCAACGAAGACGGTCATACTTGTGACCCACCAAGTGGACTTCCTTCCAGCATTTGATTCGGTTCTGTTAATGTCCGAAGGGGAGATCCTGCAAGCTGCTACCTTTGAGCAACTGATGCGCTTTAGTCAAGAGTTCCAGGACCTTGTTAATGCACACAATGCCACAGTTGGTTCTGAGAGGCAACCTGAGCAAGATTCTACCCAGAAATCTAAAATTCCAAAGGGAGAGATACAGAAGATTTACACCGAGAAACAATTGAGAGACACATCAGGAGAGCAGTTAATTAAGAAAGAAGAAAGAGAAATTGGAGACACTGGTCTCAAGCCTTACCTACAATACTTGAAATACAGCAAGGGATTCTTGTACTTCTTTTTGGCAACTCTATCTCATGTCATATTCATTGTTGGACAGTTGGTGCAAAACTATTGGTTGGCTGCAAATGTCCAGAATTCTAGTGTTAGCCAATTGAAACTGATTGCAGTTTACACAGGGATCGGATTAAGCTTATCACTCTTTTTGTTGCTCCGGTCTTTTTTTGTTGTTCTTTTAGGCCTTGAGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCTGATTTGAGTGTGGTTGACCTTGATGTGGCCTTCAAATTTACTTTTGCTGTTGGGGCAGCTATGAATGCTTATGCCAGTTTTGGAGTGTTGGCTATTCTTGCCTGGGAACTTGTGTTTGTCATTTTACCAACAATTTATCTAAGTATACTCATCCAGAGGTACTACTTTGCTGCTGGAAAAGAGTTGATGCGAATCAATGGCACAACCAAGTCTTTTGTTGCAAGCCATCTTTCTGAGTCCATTGCTGGAGCTATGACAATTAGAGCTTTCGGGGACGAAGATAGACACTTTTCAAAGAATTTGGGCTTCATTGACATAAATGCAAGTCCATTCTTCTACAGTTTCACAGCAAATGAGTGGTTGATCCAACGCCTTGAAATACTATGTGCAATCGTTCTCTCATCTTCAGCCCTTGCCCTAACTTTGATTCACACAAGAGCTTCTAAAGCTGGATTTATTGGAATGGCATTGTCATATGGTCTTTCAGTGAATATATTCCTCGTATTTTCTGTCCAAAGCCAGTGCCTTTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTTCATGAATATTCCTAGCGAAGCCCCTGCCGTCATAGAGAGCTATCAACCACCACTCAGTTGGCCTGCTATTGGTGAAGTGGAAATTTATGATTTGAAGGTTAAGTATCGGCCCAATGCTCCTCTAGTTCTTCAAGGAATTAGTTGCAAAATTGGAGGAGGACAGAAAATTGGGATTGTTGGCCGGACTGGTAGTGGAAAGACAACACTTATCAGCACTTTGTTTCGCTTGGTAGAGCCTACAGAGGGACAGATAATTATAGATGGCATAAATATTTCCACAATTGGGCTTCATGATCTCAGATCACGTCTTGGGATCATTCCACAAGAACCAACTCTTTTTAGCGGAGCTGTAAGATACAATCTTGACCCTTTATCACTGCATACTGATGAGGAAATATGGGAGGTTCTGGAAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAGAAGAGGGTCTGGACTCCTTAGTTGTACAAGACGGATCAAATTGGAGCATGGGCCAGCGACAATTATTCTGTTTGGGACGTGCTCTACTGAGGAGAAGTCGGATACTAGTGCTTGATGAAGCCACTGCATCCATAGACAATGCAACCGACTCCATTCTCCAGAAGACGATAAGGACAGAATTTGCAGACTGCACTGTAATAACAGTAGCCCACAGAATCCCAACCGTGATGGACTGCACAATGGTGCTTGCTATCAGCGATGGAAAATTGGTAGAGTATGATGAGCCAATGAAGCTGATAAAGAAGGAGGGATCGCTGTTTGGCCAGCTTGTCAAGGAGTACTGGTCTCGCTCTTCAAATGGCGGAAACACCTCCGAAGATTGGCTCTGA 4437 0.4237 MEPNEKMRLLPQDKATPKGIFLYHFVQARRYNMGESLWTVFCGSTGCSSKIGKISSSGFLAIICPCSCLNHILVISVDIILLFLLLFIFIYKASALKILSPQRSLCFSTTLNSAAFLNGSLGFVYLGLGIWILGEKLIEENTILPLHGWLVNLLQGFAWFFLGLAMILDVISFPGAILSMFSTFSGPKYAGTDSEIDGAGFYTPLPGEGGSGGDKINSDASLPPFQKAGLISRLSFWWLNSLIKKGKEKTLEDKDIPQLRREDRAEMCYSMFMEQQNKQKNKRSSHSPSILSTILLWQWKQILFSGFYALIKVLTLSTGPLFLRAFILVAEGKEAFEYEGYALTGGLFLTKCLESLSERQWFFRTRLIGLQVRSFLSAAIYQKQLKLSNAAKGSYSPGQIINFVTIDAYKIGEYPYWFHQIWSTSLQLCLALLIIYYSVGLATIAALSVVILTVVTNSPMGKLQHKYQKMLMGTQDKRLKTFTEALTNMKILKLYAWETHFKNVIEGLRKEEFKWLSSVLSQRGYNLILFWSSPIVVSAVTFWACYFLGTTLSATNVFTFMASLRLAQEPIRLIPDVISAFIEAKVSLDRIAKFLDAPELQNKHVRKMCDGKELEESIFIKSNRISWEDNTTRATLRNITLVVKPGEKVAICGEVGSGKSTLLAAVLGEVPHVNGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREVIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNEYVMGALSTKTVILVTHQVDFLPAFDSVLLMSEGEILQAATFEQLMRFSQEFQDLVNAHNATVGSERQPEQDSTQKSKIPKGEIQKIYTEKQLRDTSGEQLIKKEEREIGDTGLKPYLQYLKYSKGFLYFFLATLSHVIFIVGQLVQNYWLAANVQNSSVSQLKLIAVYTGIGLSLSLFLLLRSFFVVLLGLEASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKFTFAVGAAMNAYASFGVLAILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLSESIAGAMTIRAFGDEDRHFSKNLGFIDINASPFFYSFTANEWLIQRLEILCAIVLSSSALALTLIHTRASKAGFIGMALSYGLSVNIFLVFSVQSQCLLANMIVSVERLEQFMNIPSEAPAVIESYQPPLSWPAIGEVEIYDLKVKYRPNAPLVLQGISCKIGGGQKIGIVGRTGSGKTTLISTLFRLVEPTEGQIIIDGINISTIGLHDLRSRLGIIPQEPTLFSGAVRYNLDPLSLHTDEEIWEVLEKCQLRGAVQEKEEGLDSLVVQDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPMKLIKKEGSLFGQLVKEYWSRSSNGGNTSEDWL* 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0104 1478 FunFam ABC transporter C family member 10 600 854 - -
Vvi2g0104 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 841 IPR003439 GO:0005524
Vvi2g0104 1478 SUPERFAMILY ABC transporter transmembrane region 291 599 IPR036640 GO:0005524|GO:0016020
Vvi2g0104 1478 SUPERFAMILY ABC transporter transmembrane region 902 1207 IPR036640 GO:0005524|GO:0016020
Vvi2g0104 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1218 1454 IPR027417 -
Vvi2g0104 1478 CDD ABCC_MRP_domain2 1225 1445 - -
Vvi2g0104 1478 CDD ABCC_MRP_domain1 625 818 - -
Vvi2g0104 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 841 IPR027417 -
Vvi2g0104 1478 Pfam ABC transporter 636 770 IPR003439 GO:0005524
Vvi2g0104 1478 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 225 1464 - -
Vvi2g0104 1478 Gene3D ABC transporter type 1, transmembrane domain 874 1208 IPR036640 GO:0005524|GO:0016020
Vvi2g0104 1478 Gene3D ABC transporter type 1, transmembrane domain 270 600 IPR036640 GO:0005524|GO:0016020
Vvi2g0104 1478 ProSitePatterns ABC transporters family signature. 743 757 IPR017871 GO:0005524|GO:0016887
Vvi2g0104 1478 Gene3D - 624 870 IPR027417 -
Vvi2g0104 1478 FunFam ABC transporter C family member 5 876 1208 - -
Vvi2g0104 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 303 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0104 1478 FunFam ABC transporter C family member 10 286 599 - -
Vvi2g0104 1478 Pfam ABC transporter transmembrane region 305 565 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0104 1478 Pfam ABC transporter transmembrane region 910 1159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0104 1478 FunFam ABC transporter C family member 3 1210 1462 - -
Vvi2g0104 1478 CDD ABC_6TM_ABCC_D1 304 591 IPR044746 GO:0140359
Vvi2g0104 1478 Gene3D - 1210 1462 IPR027417 -
Vvi2g0104 1478 SMART AAA_5 645 818 IPR003593 GO:0016887
Vvi2g0104 1478 SMART AAA_5 1253 1445 IPR003593 GO:0016887
Vvi2g0104 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0104 1478 Pfam ABC transporter 1244 1392 IPR003439 GO:0005524
Vvi2g0104 1478 CDD ABC_6TM_ABCC_D2 909 1202 IPR044726 GO:0140359
Vvi2g0104 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1227 1461 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0104 Vvi-Chr2 899960 913105 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0104 558 830 Calmodulin-binding Proteins AT2G36910 27.931 4.11e-21 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0104 K05666 - vvi:100255244 2648.23