Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0102 ATGCTAAATTCTGCTGCCTTTCTTAATGGTAGTTTGGGGTTGGTTCATCTGGGATTGGGAATCTGGATTTTGAGAGAGAAGCTGAGTGAAGAGAACACCATTCTACCTCTGCATGGCTGGCTAGCGATTTTATTACAAGGCTTCACCTGGTTTTTTCTGGGTTTAGCTGTGAGGTTTAGGAGGCATCAACTTCTACATATTGCAGGGCTGAGGCTCTGTTCAGTACTTGCATTCTTTATTGCAGGTTTTCTATGTGTTACATCTATCTGGGAAGCTATTGTGGGCGATGCAGTATCAGTCAAGATGATTTTAGATGTTATATCTTTTCCTGGAGCAATTCTATTGATGCTCTCCACTTTTTCAGGACCGAAATATGCAGGAACTGATTCAGAAATTGATGGTGCTGGTTTCTATACACCTTTGCCTGGTGAAGGAGGCAGTGGTGGTGATAAAATCAATTCAGATGCCAGCTTACCTCCTTTTGAGAAAGCTGGGCTCATTAGTAGACTGTCATTTTGGTGGTTGAATTCGTTGATGAAGAAGGGTAAGGAGAAAACCCTTGAGGACAAAGACATTCCTCAGCTAAGAAAGGAAGATCGAGCGGAAATGTGCTACTTAATGTTCATGGAACAGCAGAACAAGCAGAAAAACAAGCGGTCATCTGACTCTCCTTCCATTTTGTCGACAATATGCTTGTGGCAGTGGAAACAAATTTTGATTTCTGGCATCTTTGCATTGATCAAGGTGCTAACACTTTCTACTGGCCCTCTGTTTCTTAGAGCCTTCATCCTGGTTGCTGAAGGCAAAGAAGCTTTTAAGTATGAAGGTTATGCACTGACAGGAGGGCTCTTCCTTACTAAATGCTTAGAATCGCTATCAGAGAGGCAATGGTTCTTTCGAACTAGATTGATTGGGCTCCAAGTGAGATCATTTCTATCTGCAGCCATCTATCAGAAGCAGCTTAAGCTCTCAAATGCTGCAAAGGGGTCGTATTCCCCTGGTCAGATCATTAACTTTGTTACCATTGATGCTTACAAAATAGGTGAATACCCGTACTGGTTTCACCAGATATGGTCAACAAGCCTCCAGTTATGTCTGGGGCTTGCAACTATAGCAGCTCTGTTTGTAGTAATATTGACTGTAATTGCAAACTCTCCTATGGGAAAGTTACAACACAAGTACCAGAAAACGCTCATGGGAACTCAGGACAAGAGACTGAAGGCTTTCACAGAGGCACTTACAAACATGAAAATTCTGAAGCTGTATGCTTGGGAGACTCATTTCAAGAATGTCATAGAAGGGTTGAGGAAAGAGGAATTCAAGTGGTTATCATCAGTTCTGTCACAGAGAGGGTACAGTCTGATTCTGTGGTGGTCCTTTCCCATTGTAGTATCGGTGGTTGCTTTCTGGGCATGCTACTTTCTTGGAACTACTCTCTCTGCTACCAATGTTTTCACATTTATGGCAAGTTTACGCATTGCCCAGGAGCCAATTAGGTTAATCCCTGATGTCATTTCAGCATTCATTGAGGCCAAGGTTTCATTAGATCGGATTGCAAAGTTTCTTGATGCACCAGAGCTGCAGAACAAACATGTAAGGAGGATGTGTGATGGGAAGGAGCTGGAGGAATCCATTTTTATCAAGAGCAACAGAATTTCATGGGAGGATAACTCCACAAGGGCTACGCTAAGGAACATAAATTTGGTGGTTAAGCCTGGGGAAAAGGTAGCCATTTGTGGAGAGGTTGGCTCAGGCAAATCGACACTATTAGCTGCTATTCTTGGAGAAGTTCCACACGTTAATGGCATAGTTCGAGTTTATGGAAAGATTGCTTACGTCTCTCAGACAGCATGGATTCCAACAGGTACCATAAGAGAAAATATTCTGTTTGGGTCTGCTATGGATCCTTACAGATACAGAGAGGCTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTTGGTGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAGAAGCAGAGGGTTCAACTCGCACGCGCATTATATCAGGATGCAGATGTATATCTCCTGGATGATCCATTTAGTGCGGTCGATGCACATACTGCAACCAGTCTATTTAATGAATATGTCATGGGAGCTCTATCAACGAAGACAGTCATACTTGTGACCCACCAAGTGGACCTCCTTCCTGCATTTGATTCAGTTTTGTTAATGTCTGAAGGGGAAATCCTGGAAGCTGCTACCTATGACCTGCTGATGCACTCTAGTCAAGAGTTCCAGGACCTTGTTAATGCACACAATGCCACAGTTGGTTCTGAGATGCAACCTGAGCATGATTCTACCCAGAAATCTAAAATTCCGAAGGGAGAGATACAGGAGATTTGCACCGAGAAACAATTGAGAGACACATCAGGAGAGCAGTTAATTAAGAAAGAAGAAAGAGAAACGGGAGACACTGGTCTCAAGCCTTACCTACAATACTTGAAATACTGCAAGGGATTCTTGTACTTCTTTTTGGCAACTCTATCTCATGTCATATTCATTGTTGGACAGTTGGTGCAAAACTATTGGTTGGCTGCAAATGTCCAGAATTCTAGTGTTAGCCAATTGAAACTGATTGCAGTATACACAGGGATCGGATTAAGCTTATCACTCTTTTTGTTGCTCCGGTCTTTTTTTGTTCTTTTAGGCCTTGGGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCCGATTTGAGTGTGGTTGACCTTGATGTGGCCTTCAAATTTACTTTTTCTGTTGGGGCAGCTATGAATACTTATGCCAGTTTTGGAGCATTGGCTATTCTTGCCTGGGAACTTGTGTTAGTCATTTTACCAACAATTTATCTAAGTATACTCATCCAGAGGTACTACTTTGCTGCTGGAAAAGAGTTGATGCGAATCAATGGCACAACCAAGTCTTTTGTTGCAAGCCATCTTTCTGAGTCCATTGCTGGAGCTATGACAATTAGAGCTTTCGGGGACGAAGATAGACACTTTTCAAAGAATTTGGGCTTCATTGACATAAATGCAAGTCCATTCTTCTACAGTTTCACAGCAAATGAGTGGTTGATCCAACGCCTTGAAATACTATGTGCAATCGTTCTCTCATCTTCAGCCCTTGCCCTAACTTTGCTTCACACAAGTGCTGCTAAAGCTGGATTTATTGGAATGGCATTGTCATATGGTCTTTCAGTGAATGCATTCCTCGTATTTTCTGTCCAAAGCCAGTGCCTTTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTTCTTGAATATTCCTAGCGAAGCCCCTGACGTCATGGAGAGCAATCAACCACCACTCAGTTGGCCTGCTATTGGTGAAGTGGAAATTTATGATTTGAAGGTAACGTGA 3486 0.4251 MLNSAAFLNGSLGLVHLGLGIWILREKLSEENTILPLHGWLAILLQGFTWFFLGLAVRFRRHQLLHIAGLRLCSVLAFFIAGFLCVTSIWEAIVGDAVSVKMILDVISFPGAILLMLSTFSGPKYAGTDSEIDGAGFYTPLPGEGGSGGDKINSDASLPPFEKAGLISRLSFWWLNSLMKKGKEKTLEDKDIPQLRKEDRAEMCYLMFMEQQNKQKNKRSSDSPSILSTICLWQWKQILISGIFALIKVLTLSTGPLFLRAFILVAEGKEAFKYEGYALTGGLFLTKCLESLSERQWFFRTRLIGLQVRSFLSAAIYQKQLKLSNAAKGSYSPGQIINFVTIDAYKIGEYPYWFHQIWSTSLQLCLGLATIAALFVVILTVIANSPMGKLQHKYQKTLMGTQDKRLKAFTEALTNMKILKLYAWETHFKNVIEGLRKEEFKWLSSVLSQRGYSLILWWSFPIVVSVVAFWACYFLGTTLSATNVFTFMASLRIAQEPIRLIPDVISAFIEAKVSLDRIAKFLDAPELQNKHVRRMCDGKELEESIFIKSNRISWEDNSTRATLRNINLVVKPGEKVAICGEVGSGKSTLLAAILGEVPHVNGIVRVYGKIAYVSQTAWIPTGTIRENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNEYVMGALSTKTVILVTHQVDLLPAFDSVLLMSEGEILEAATYDLLMHSSQEFQDLVNAHNATVGSEMQPEHDSTQKSKIPKGEIQEICTEKQLRDTSGEQLIKKEERETGDTGLKPYLQYLKYCKGFLYFFLATLSHVIFIVGQLVQNYWLAANVQNSSVSQLKLIAVYTGIGLSLSLFLLLRSFFVLLGLGASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKFTFSVGAAMNTYASFGALAILAWELVLVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLSESIAGAMTIRAFGDEDRHFSKNLGFIDINASPFFYSFTANEWLIQRLEILCAIVLSSSALALTLLHTSAAKAGFIGMALSYGLSVNAFLVFSVQSQCLLANMIVSVERLEQFLNIPSEAPDVMESNQPPLSWPAIGEVEIYDLKVT* 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0102 1161 Gene3D - 551 798 IPR027417 -
Vvi2g0102 1161 SUPERFAMILY ABC transporter transmembrane region 827 1135 IPR036640 GO:0005524|GO:0016020
Vvi2g0102 1161 Gene3D ABC transporter type 1, transmembrane domain 227 530 IPR036640 GO:0005524|GO:0016020
Vvi2g0102 1161 FunFam ABC transporter C family member 5 803 1134 - -
Vvi2g0102 1161 CDD ABC_6TM_ABCC_D2 836 1127 IPR044726 GO:0140359
Vvi2g0102 1161 ProSitePatterns ABC transporters family signature. 670 684 IPR017871 GO:0005524|GO:0016887
Vvi2g0102 1161 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 161 1160 - -
Vvi2g0102 1161 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 547 768 IPR003439 GO:0005524
Vvi2g0102 1161 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 848 1116 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0102 1161 CDD ABCC_MRP_domain1 552 745 - -
Vvi2g0102 1161 Pfam ABC transporter 563 697 IPR003439 GO:0005524
Vvi2g0102 1161 Gene3D ABC transporter type 1, transmembrane domain 801 1134 IPR036640 GO:0005524|GO:0016020
Vvi2g0102 1161 SUPERFAMILY ABC transporter transmembrane region 230 526 IPR036640 GO:0005524|GO:0016020
Vvi2g0102 1161 FunFam ABC transporter C family member 10 222 526 - -
Vvi2g0102 1161 FunFam ABC transporter C family member 10 527 781 - -
Vvi2g0102 1161 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 239 510 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0102 1161 Pfam ABC transporter transmembrane region 239 494 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0102 1161 Pfam ABC transporter transmembrane region 837 1083 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0102 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 768 IPR027417 -
Vvi2g0102 1161 CDD ABC_6TM_ABCC_D1 240 518 IPR044746 GO:0140359
Vvi2g0102 1161 SMART AAA_5 572 745 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0102 Vvi-Chr2 888236 894005 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0102 547 794 Calmodulin-binding Proteins AT2G36910 27.715 7.35e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0102 K05666 - vvi:100250083 2227.21