Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0071 ATGGTGACAGAGGGTCTTCACACACAGCCCATAAAAGATATTGTTGCTAAGGTGACTTTAATGGGGTTCAACTGCATCCGTCTCACGTATGCAACCTTCATGTGGACAAGACCAGACTACGGCAACAAGACTGTGGCTCAGTCTCTTGATTCTATGAATCTCACCCAGGCCAGGGAAGGGATAGCTCGGAACAATCCCCAGCTGTTGAATCTCAGCCTTCAGGATGCCTATGAAGCTGTTGTTGATGCGATTGGAGCAAATGGTCTCATGCTTGTGCTTGATAACCATGTTAGCAAGCCCATGTGGTGCTGCGCCTCAGAGGATGGAAATGGTTTCTTTGGAGACATGTTCTTCGACCCCAAGGAATGGATAGAGGGTCTAACACAGGTCGCGAGCCGGTTCAAGGGGAAACCTCAGGTGGTGGCAATGAGCATGAGGAATGAGTTACGAGGCCCACGCCAGAACCTGCCGGATTGGTATACTAACATGACAGAAGGAGCAAAAGCAATCCACAGCACCAACCCAGATGTGCTTGTGCTCGTTTCAGGCTTGAATTTCGACTTGGACCTCAGCTTCTTGAACACCACACCATTCGGACTGACACTAGACAACAAGGTGGTGTATGAGGCGCACTGGTACTCCTTCGACTTCACCCAGCAATGGCAGACTCAGCCCCTGAACCGGGTTTGCGGCCAGTGCGCAGATGAGTTCCAGAGGGAAGCAGCTTTCCTTATCACCGGCGATAACGCGGCTCCTCTTATTCTCAGCGAGTTTGGCGTTGATGTAAGGGGAGTAAACCAGGATGATAACCGATACTTCAACTGCTTGCTTCCCACTGTTGCTGACAAGGACTTGGACTGGGCGCTGTGGACTCTGCAAGGCAGCTATTATTACAGAGAGGGGAAGGCCGGGCCTGAAGAGGTATACTCTGTCCTGGATTACAACTGGGACAAGCCCCGAGATCCAAAATATCTAGAGAGATTGACCATCCTCCAACAAACTATCCAAGATCCAAACTCGATTGCTTTATCATACTACGTACTTGTACACCCCGAAAGTGGGTTTTGCGTGAATGTTGAAGGACAGGACAACGTTCATGGAAGCAGCTGCCGAGAGCGGAGTAAATGGAGTCACAGCGGAGATGGGTCGCCGATTCAGCTGGTGGGTAGTGAGCTGTGCCTGAAGGCTGTTGGTGATGGAGTTCCCGTGGCACTTTCTACTGATTGTAAGAGCCCATGGGCGACTTGGAAACTGGTTTCAGACTCGATGCTTCATATAGCTGCTATGGATGAACAAGGGAACTCGCTGTGTTTAGAATCCACAAGTTCAAACTACTCTTCAATTCTGACAAGGAGTTGTGCTTGTTTAAATAATGAGACTAACTGTGATCCTCAGAGCCAGTGGTTTAGGCTTGTTCCTTCCAATTTATCCTAG 1434 0.4958 MVTEGLHTQPIKDIVAKVTLMGFNCIRLTYATFMWTRPDYGNKTVAQSLDSMNLTQAREGIARNNPQLLNLSLQDAYEAVVDAIGANGLMLVLDNHVSKPMWCCASEDGNGFFGDMFFDPKEWIEGLTQVASRFKGKPQVVAMSMRNELRGPRQNLPDWYTNMTEGAKAIHSTNPDVLVLVSGLNFDLDLSFLNTTPFGLTLDNKVVYEAHWYSFDFTQQWQTQPLNRVCGQCADEFQREAAFLITGDNAAPLILSEFGVDVRGVNQDDNRYFNCLLPTVADKDLDWALWTLQGSYYYREGKAGPEEVYSVLDYNWDKPRDPKYLERLTILQQTIQDPNSIALSYYVLVHPESGFCVNVEGQDNVHGSSCRERSKWSHSGDGSPIQLVGSELCLKAVGDGVPVALSTDCKSPWATWKLVSDSMLHIAAMDEQGNSLCLESTSSNYSSILTRSCACLNNETNCDPQSQWFRLVPSNLS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0071 477 Pfam Cellulase (glycosyl hydrolase family 5) 9 293 IPR001547 GO:0004553|GO:0071704
Vvi2g0071 477 SUPERFAMILY Ricin B-like lectins 342 469 IPR035992 -
Vvi2g0071 477 Gene3D Glycosidases 1 330 - -
Vvi2g0071 477 ProSiteProfiles Lectin domain of ricin B chain profile. 343 471 - -
Vvi2g0071 477 SUPERFAMILY (Trans)glycosidases 3 324 IPR017853 -
Vvi2g0071 477 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0071 Vvi-Chr2 681324 682908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0071 1 474 Glycoside Hydrolase AT1G13130 40.377 8.67e-139 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0071 K01179 - vvi:100250178 986.097