Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0070 ATGAGCATGAGGAATGAGATACGAGGCCCACGCCAAAACCTGCCGGATTGGTATAAAAACATGAGGGAAGGAGCAAAAGCAATTCACAGCACCAACCCAGATGTGCTTGTGCTGGTTTCAGGCTTGAATTTCGACAAGGACCTCAGCTTCTTGAGCACCACACCATTCGGACTGACACTAGACAAGAAGGTGGTGTATGAGGCGCACTGGTACTCCTTCGACTTCACCCAGCAATGGCAGACTCAGCCCCTGAACAGGGTTTGCCGCCAGCGCGCAGATGAGTTCCAGAGGGAAGCAGCTTTCCTTATCACCGGCGACAACGCGGCTCCTCTTATTATCAGCGAGTTTGGCGTTGATTTACGGGGAGTAAACCAGGCTGATAACCGATACTTCAACTGCTTGCTTCCCACCGTTGCTGAAAAGGACTTGGACTGGGCGCTGTGGACTCTGCAAGCCAGCTATTATTACCGAGAGGGGAAGGCCGGGCCTGAAGAGGTATATTCTGTCCTGGATTACAACTGGGACAAGCCCCGAGATCCAAAATATTTAGAGAGATTGACCATCCTCCAACAAACTATCCAAGATCCAAACTCAACTACCCTATCGTACTACTTAATTGTCCACACCGAAAGTGGGTTTTGCGTGAACGTTGAAGGGGAGGACAATGTTCATGGAAGCAGTTGCCGAGAGCGGAGTAAATGGAGTCACGGTGGAGATGGGTGGCCCATTAGGTTAGTGGGTGGTGAGCTGTGCCTGAAGGCTGTTGGCGATGGAGTTCCCGTGACACTTTCTACTGATTGTAAGAGCCCAAGGGCTACTTGGAAACTGGTTTCAGACTCAAGGCTTCACGTAGCTGCCATGGATGAACAAGGGAACTCACTGTGTTTAGAAGCCACAAGTTCAAACTACTCTTCAATTCTGACAAGGAGATGTGCTTGTGTAAAGAATGAGGCTAACTGTGATCCTCAGAGCCAGTGGTTTAAGCTTGTACCTTCCAATTTATCCTAG 1008 0.497 MSMRNEIRGPRQNLPDWYKNMREGAKAIHSTNPDVLVLVSGLNFDKDLSFLSTTPFGLTLDKKVVYEAHWYSFDFTQQWQTQPLNRVCRQRADEFQREAAFLITGDNAAPLIISEFGVDLRGVNQADNRYFNCLLPTVAEKDLDWALWTLQASYYYREGKAGPEEVYSVLDYNWDKPRDPKYLERLTILQQTIQDPNSTTLSYYLIVHTESGFCVNVEGEDNVHGSSCRERSKWSHGGDGWPIRLVGGELCLKAVGDGVPVTLSTDCKSPRATWKLVSDSRLHVAAMDEQGNSLCLEATSSNYSSILTRRCACVKNEANCDPQSQWFKLVPSNLS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0070 335 SUPERFAMILY Ricin B-like lectins 199 329 IPR035992 -
Vvi2g0070 335 Gene3D Glycosidases 1 188 - -
Vvi2g0070 335 SUPERFAMILY (Trans)glycosidases 3 182 IPR017853 -
Vvi2g0070 335 Gene3D - 202 329 - -
Vvi2g0070 335 Pfam Cellulase (glycosyl hydrolase family 5) 5 151 IPR001547 GO:0004553|GO:0071704
Vvi2g0070 335 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0070 Vvi-Chr2 678786 679886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0070 1 330 Glycoside Hydrolase AT1G13130 39.039 2.37e-88 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0070 K01179 - vvi:100245045 701.434