Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0068 ATGAAAGGGAAGAACAATCTGCAGACCATTCTCTTGATTTCTCTTGCTATGTCTGCAACTCTCTGCAATTCGCTTCCTCTTTCAACGAGGGGAAGATGGATAGTGGATAACGCGGCTGGGGGTCGCGTGAAGATGGCCTGTGTTAATTGGGTTTCTCACTTGGAGCCTCTGGTCACAGAGGGCATTCACGCCCAGCCCGTAGAACGCATTGCTGAGACGGTGAAAGCAATGGGGTTCAACTGCATCCGGCTCACATATGCGACCTTCATGTGGACGAGGGCCGACTATAACAACAGGACTGTGGCACAGTCTCTTGATTCCTTCAACCTCACCCAAGCCAAGGAAGGAATAGCTCGAAACAATCCTAAGCTGTTGAATCTCCAGATAATCGACGCCTATGAAGCTGTGGTCAATGAGCTTGGCGCACATGGGCTCATGCTTGTGCTTGATAACCATGTCAGCAAGCCCTTGTGGTGCTGCGCCAGAGAGGACGGAAACGGGTTCTTTGGAGACATGTACTTCGACCCCAAGGAGTGGATCAAGGGCTTAACCGACGTCTCCACCCGGTTCAAGAACAATCCTCAGGTGGTGGCTCTGAGTATGAGAAATGAGATGCGAGGAGCACGTTCTAACGTGCCGGATTGGTATCGGTACATGCGAAAAGGAGCAAAAGCCATCCACAAGGCCAACCCAAAGGTCCTGGTGATAGTTTCAGGGTTGAATTTCGACAAGGATCTTAGCTTCCTGGGGCGCAAGTCATTCGGGTTTACGCTAAACAACAAGGTGGTGTTTGAGGCACATTGGTATACGTTTGACTTCACCCAGCAGTGGCAGCAGCTTCCACCGAACCGGGCTTGCCGCCAGCGGGCAGATGAGTTCCAGAGGGACGCAGCCTTTCTGACCACCGGAGACAAGGCAGCTCCTCTTTTTATCAGCGAGTATGGCATTAACTTACAAGAGACCAGCCAGGTTGATAGCCGATACTTCACCTGCTTCCTGCCCACTGTTGCTGAGAAGGACTTGGATTGGGCTCTGTGGACTCTGCAAGCCAGCTACCATTACAGACAAGGGCATGCTGGGGGTGGAGAATCCTATTCTGTGCTGGATTACAGCTGGAGCAAGCCACGGTATCCACAATTTCTAGAGAGAATGGTCATTCTCCAAAACTTGCTCCAAGATCCAAACTCAAATGTTTCACCATACTACCTACTCGTCCATGCACAGAGTGGGTTTTGTGTGAATGTGAAACATAACGATGTGGTTTCTGTAAGTAGTTGCAGGAAGAATAGTAGGAATAGCAGATGGAACCATGAAGGAGATAGATCACCCATCAAGAAGTTGGGCCGTAAGCACTGCCTCAAGGCTGTTGGTGATGGGGTTCCTCTCACTCTCTCTGATGACTGCTCCAGCCCAAGAGCTACCTGGCAATTGGTTTCAGACTCGATGCTCCAAATCGCTGCCATGGATGAACAAGGGAACCCACTGTGCCTAGATGCCACGCCCTCATCAAACTCTACTCCTATTTTGACCAGGGCTTGTGCCTGTCTAAACAATGAGGCTGGTTGTGATCCTCTCAGCCAGTGGTTCAAGCTTGTTCCTTCAAATATAGCTTAA 1614 0.5037 MKGKNNLQTILLISLAMSATLCNSLPLSTRGRWIVDNAAGGRVKMACVNWVSHLEPLVTEGIHAQPVERIAETVKAMGFNCIRLTYATFMWTRADYNNRTVAQSLDSFNLTQAKEGIARNNPKLLNLQIIDAYEAVVNELGAHGLMLVLDNHVSKPLWCCAREDGNGFFGDMYFDPKEWIKGLTDVSTRFKNNPQVVALSMRNEMRGARSNVPDWYRYMRKGAKAIHKANPKVLVIVSGLNFDKDLSFLGRKSFGFTLNNKVVFEAHWYTFDFTQQWQQLPPNRACRQRADEFQRDAAFLTTGDKAAPLFISEYGINLQETSQVDSRYFTCFLPTVAEKDLDWALWTLQASYHYRQGHAGGGESYSVLDYSWSKPRYPQFLERMVILQNLLQDPNSNVSPYYLLVHAQSGFCVNVKHNDVVSVSSCRKNSRNSRWNHEGDRSPIKKLGRKHCLKAVGDGVPLTLSDDCSSPRATWQLVSDSMLQIAAMDEQGNPLCLDATPSSNSTPILTRACACLNNEAGCDPLSQWFKLVPSNIA* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0068 537 SUPERFAMILY (Trans)glycosidases 25 378 IPR017853 -
Vvi2g0068 537 Gene3D Glycosidases 24 387 - -
Vvi2g0068 537 Gene3D - 402 528 - -
Vvi2g0068 537 ProSiteProfiles Lectin domain of ricin B chain profile. 399 531 - -
Vvi2g0068 537 Pfam Cellulase (glycosyl hydrolase family 5) 66 349 IPR001547 GO:0004553|GO:0071704
Vvi2g0068 537 SUPERFAMILY Ricin B-like lectins 397 530 IPR035992 -
Vvi2g0068 537 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 14 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0068 Vvi-Chr2 670366 672560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0068 26 532 Glycoside Hydrolase AT3G26140 41.520 8.14e-142 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0068 K01179 - vvi:100267356 1112.06