Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0063 ATGCCTGAAGACAACCAGTTCCAACCCTTGGCGCCTGCCCGACTCCATGGTAAGAGCGACGAAGAGTTCGGTGTTTTCAAACCCAGAGCGTCCAAGCCGCCGCGGAGGAGCAGTAAATGTCCGGTGTATGTCCTTGCGGGGCTCGTCACACTGGCCGCGATTGCATTAGTCTTTGCGTTAGCCGTCTTGCGGGTAGAGGCTCCCGACGTTGAATTAAAATCTGTTGCAGTGAAAAATCTAACGCATGGAACTTCACCATCGCCTTCTTTTAATGTAACGCTCACTGCAGAGGTCTCCGTTCAGAACAAAAACTTTGGTGCCTTCAATTTTGAGAACGGCACAGCAACAGTCCTGTACGAGGGCATGGTGGTCGGTGATGAGGAATTTAGCAAGGCTCACGTTGAATCGAGGAAGACGAAGAGGATGAACGTTACTTTGGATGTGAGATCAGATAGGTTGTGGAATGACAAGAATCTAAGCAGTGATATTAGCTCCGGGAGTGTGAATCTGACCACCTATGCCCAGGTGACCGGAAAAGTACGGGTTATGAAGGTAGTTAGGCGGCGAACAACGGCGAGAATGAACTGCTCCATGACTCTTAATCTGACGAGCAGTTCCATCCAGGATTTAGTATGCAGATGA 642 0.4984 MPEDNQFQPLAPARLHGKSDEEFGVFKPRASKPPRRSSKCPVYVLAGLVTLAAIALVFALAVLRVEAPDVELKSVAVKNLTHGTSPSPSFNVTLTAEVSVQNKNFGAFNFENGTATVLYEGMVVGDEEFSKAHVESRKTKRMNVTLDVRSDRLWNDKNLSSDISSGSVNLTTYAQVTGKVRVMKVVRRRTTARMNCSMTLNLTSSSIQDLVCR* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0063 213 SUPERFAMILY LEA14-like 52 155 - -
Vvi2g0063 213 Gene3D - 53 202 - -
Vvi2g0063 213 Pfam Late embryogenesis abundant protein 98 197 IPR004864 -
Vvi2g0063 213 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 33 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0063 Vvi-Chr2 641176 641817 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0063 - - vvi:100241699 386.726