Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0058 ATGGACGGAGAATTGTTGGACGACATCATAAGGCGGCTTGTTGATGCGAAGAACGGGCGGACGCCGAGGCAGGTGCAGTTGACGGAAGCGGAAATCCGGATGCTTTGCGTGACGTCGAAGGAGATCTTCCTAAGCCAGCCGAATCTTCTTGAGCTTGAAGCGCCGATAAAGATTTGTGGAGATGTTCATGGTCAGTTTTCTGATCTTCTAAGATTGTTTGAGTACGGTGGGTACCCACCAGAAGCAAACTATTTATTCCTAGGAGACTATGTTGATCGTGGTAAACAGAGCATAGAGACGATATGCCTTCTCCTTGCATACAAGATCAAGTACAAGGAAAACTTCTTCCTCCTCAGGGGCAACCATGAATGTGCTTCCATCAACCGAATTTATGGGTTCTATGATGAATGTAAGAGGAGGTTTAACGTTCGCCTCTGGAAGACATTTACTGACTGCTTCAACTGCCTTCCTGTAGCCGCTCTTATCGATGAGAAGATCATTTGCATGCATGGAGGTTTATCTCCTGAATTAAAAAACTTGGATCAGATCAGAAATATTGCTCGCCCTGTTGATGTACCAGATCAGGGGCTTCTCTGTGATCTCCTGTGGGCAGATCCTGATAAAGATATTGAAGGTTGGGGAGAGAATGACAGGGGTGTGTCTTACACATTTGGGGCTGACAAGGTTACTGAATTCCTTCAGAAACATGACCTTGATCTCATTTGCCGAGCTCATCAGGTTGTGGAAGATGGGTATGAGTTTTTTGCAAAGAGGCAGCTAGTGACCATATTCTCGGCACCAAATTACTGTGGCGAGTTCGACAATGCTGGTGCCATGATGATTGTGGATGATACATTAACATGTTCCTTTCAGATCCTTAAATCAACTGATAAGAAGGGAAAACTAGGCTTTGGAAACATGTTGAGACCAGGAACGCCTCCTCACAAGGGTAAGGGTTGA 960 0.4542 MDGELLDDIIRRLVDAKNGRTPRQVQLTEAEIRMLCVTSKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKIICMHGGLSPELKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVTEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMIVDDTLTCSFQILKSTDKKGKLGFGNMLRPGTPPHKGKG* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0058 319 FunFam Serine/threonine-protein phosphatase 1 303 - -
Vvi2g0058 319 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Vvi2g0058 319 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Vvi2g0058 319 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Vvi2g0058 319 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Vvi2g0058 319 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Vvi2g0058 319 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Vvi2g0058 319 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Vvi2g0058 319 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Vvi2g0058 319 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Vvi2g0058 319 SUPERFAMILY Metallo-dependent phosphatases 21 297 IPR029052 -
Vvi2g0058 319 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Vvi2g0058 319 SMART pp2a_7 27 297 IPR006186 GO:0016787
Vvi2g0058 319 Gene3D - 2 306 IPR029052 -
Vvi2g0058 319 CDD MPP_PP1_PPKL 6 294 - -
Vvi2g0058 319 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0058 Vvi-Chr2 572061 578561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0058 35 240 Calmodulin-binding Proteins AT5G63870 29.268 2.01e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0058 K06269 - vvi:100256994 665.225