Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0057 ATGACCGGCGCGACGATTTCTCTGCCGACGTCAGTGTCGAACATCGCCGGAGTTGAAACTACCAGTACGAGCTATTCGGCGTCGTTGGCCAACTCCTTCCGACTCAACGCCGTTCTCGAGCGACTAGCTATGCACGTTCGCTCTGGTCACCGAATCCTCGACGGCCAGCGGAGCACCGAGGAGTTTCACAATCTCTGCCTCTCACTCGCCAGGGGTATTGATTATTCACTTGCAAATGGTGAGGTTCCAGCTAGGGTTCAAGATTTACCTTTACTATTAAAACAGATATGTCAACGTAGAAATGATTTGTTTCTACTTGGGGGTATAATGGTGCTAATGGTCTCTGTAAAGAATGCTTGTAAGGTTGGATGGTTTACAGAAAAGGATACTGAAGAGCTTCTGACTCTTGTAAATGAGATAGGGAGCAACTTCTGCAATCTGGGAGATAATAATACTGAACCAATTTCCTTCCACCCCACTATTTCAAAAATTATGACCAGATTCTATCCACGAATGGAAATGGGCCAGATACTTGCTTCTCGTGAAGTGAAGCCTGGCTATGGAACATTTTTGGTCGATTTTCATATCTCAAAGAGTACAAAATTTTCTTCCCAAGAAAAAATAAGATTATTTGTTGCTCAAACAGATAATATAGAGACTTCTTCATGTATTATAACTCCTCCTCAAGTGAACTTTCTGTTAAATGGAAAGGGAGTAGAGAGAAGGACAAACGTTTTCATGGACAGTGGACCACAGATTCCAACAAATGTAACTCCAATGCTAAAGTATGGAACAAATCTTCTTCAAGCTGTGGGCCAGTTCAATGGTCATTATATCTTAGCCATTGCCTTTATGGCTGTGATATCATCCCCTGACAATCCAGTGTTGCAAGATTATGTTCAGCCTGCTGTTTCTATGCTGCATTCAGATAATGAGATAGTTGAGGGACCATCACGAATATCACTGAATTGCCCCATAAGCCGTACTCGTATTAAAGTTCCTGTCAAAGGACATTCATGTAAACATCTGCAGTGTTTTGATTTTGGAAACTTTGTGGAAATAAATTCAAGAAGACCATCATGGCGGTGCCCACACTGTAACCAGTATGTCTGCTACACTGACATTCGTATTGATCAAAATATGGTCAAGGTCCTGAAAGAGGTGGGAGAGAATGTTGCTGATGTGATTATCTCTGCAGATGGATCATGGAAGGCCATCTTGGAAAGCAATGACCATGTAGACCAACCACGTGTTGGAACCCTCAATTCCCAACAAAAAGGGCCCGACTTGCAAGGATCTACCAGCTTCTCAAATGCCTCTCCTAATGTTTGGGATCTTACTGAGGGGGATGATGAGATGAATGCTTTTGATGCTTGTGAAATCGAAGATAGGAAACCCTTCCAGTCTAATATTCAAGGTCATTCCATTACTACAAAGCAGACTATGGCACCAGAATTGAACAATGCAACTGAAGTGAATCAAAATGCTGTTTCTCGAGTACAGGATGGCTTTTGTTCTGGAATTCTTTTGTCAACTTATGGGTCTTCAACCCATAGTGCCCGGTCAGATGCCCAATTTATTGGTGGCACTTCTCAGCCCTCTCCTGCCAATTTTTTGCTGCCTCCAGTGTTAACTGATGCTATTTCTCCTGCACTTAATCGAGGAACTGAGGATATTCGTGGGAATACTCATCTGACAACCTCTACTCTGCATGATCAGTTGCCTATTCCCGATAGTTTGCAGTTACAGCAGGCACAATTTGGGCATTCAATTGTCAGCAATGAATATGGAAGGTTTCCAACAATTCCCAGACATATAACCAGAACTCCAATAGCGGTTCAAGCCCTTCCAGCTCAGACCCAAACATCCGGTCCACATCATAGATCAAGAACAACTTTGATTTCGATGGTACCCAATGGACCCAATACTGTTGGTAGTGACATGGAAAGGCCACAGCAGTTCTCGAGATCAATTTTCAACCCAGTTCAGATATCAGACATCAGTGCATCTGCATTACAGCATCACTCAATGTCACAGAACTGGAACCAACAGGTTGCTGGCCATCCAACTACAAGTCAACGTCCTGGTCCAGGTGCTTACAGAACTTCATCCGGGCTTCCAACCGAACCCCAGACTTTACAACAACAACAATCTCCTCAGGCAAGGACACATTCAAACCTATTGAGATCATCTGCTCATCATCACTCACGGTCCCAAGTTCAGCAAGGAGGTGCCCAAGGTCGTGCTACCCATGCAGTTGGCACTGGAATCAGCCAAAATGCTCAGCCTATGGTTGCAGCTCAGCGAGCAGCCCAGATGACCCGAATGCCATTGCCTGTTCAAAATCAAACATCCAGAACAGGCTCTGCTTTTCCTGTAAATGCCAATGGGGGTAGGTCAACAGCAGGGGAGCAGAGAGGTAACATAGAAGGAATGGTGCAAGCAGTCTCAAGACCTGAAAGCTTGGTGGATTTGGCATCAGAGCAGAACTGGCGCCCTACAGGGCTAATGCGTGGAAGCCTTGTTGGCCGGGCTTACAATTCTGCTCTTAACCAGCTAGTGATTCAGCCTACACAACCGACTCAATCTACGAGACCACCCACGCCTATCACTTCACCTCCACCTGGTTTTCCACCCCACTTGCAAGCACTCCTCACCAATATCAGGACTCCCCTTGTTCCTCAAGCGCCTAATTATCCAATGACCCAACCAGCTAGTACAACTGGAGGCTCGGGTATTCTTCCTGAGAGGTCTCTGGGGTTGCATTGA 2769 0.4525 MTGATISLPTSVSNIAGVETTSTSYSASLANSFRLNAVLERLAMHVRSGHRILDGQRSTEEFHNLCLSLARGIDYSLANGEVPARVQDLPLLLKQICQRRNDLFLLGGIMVLMVSVKNACKVGWFTEKDTEELLTLVNEIGSNFCNLGDNNTEPISFHPTISKIMTRFYPRMEMGQILASREVKPGYGTFLVDFHISKSTKFSSQEKIRLFVAQTDNIETSSCIITPPQVNFLLNGKGVERRTNVFMDSGPQIPTNVTPMLKYGTNLLQAVGQFNGHYILAIAFMAVISSPDNPVLQDYVQPAVSMLHSDNEIVEGPSRISLNCPISRTRIKVPVKGHSCKHLQCFDFGNFVEINSRRPSWRCPHCNQYVCYTDIRIDQNMVKVLKEVGENVADVIISADGSWKAILESNDHVDQPRVGTLNSQQKGPDLQGSTSFSNASPNVWDLTEGDDEMNAFDACEIEDRKPFQSNIQGHSITTKQTMAPELNNATEVNQNAVSRVQDGFCSGILLSTYGSSTHSARSDAQFIGGTSQPSPANFLLPPVLTDAISPALNRGTEDIRGNTHLTTSTLHDQLPIPDSLQLQQAQFGHSIVSNEYGRFPTIPRHITRTPIAVQALPAQTQTSGPHHRSRTTLISMVPNGPNTVGSDMERPQQFSRSIFNPVQISDISASALQHHSMSQNWNQQVAGHPTTSQRPGPGAYRTSSGLPTEPQTLQQQQSPQARTHSNLLRSSAHHHSRSQVQQGGAQGRATHAVGTGISQNAQPMVAAQRAAQMTRMPLPVQNQTSRTGSAFPVNANGGRSTAGEQRGNIEGMVQAVSRPESLVDLASEQNWRPTGLMRGSLVGRAYNSALNQLVIQPTQPTQSTRPPTPITSPPPGFPPHLQALLTNIRTPLVPQAPNYPMTQPASTTGGSGILPERSLGLH* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0057 922 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 34 496 - -
Vvi2g0057 922 MobiDBLite consensus disorder prediction 673 751 - -
Vvi2g0057 922 MobiDBLite consensus disorder prediction 782 804 - -
Vvi2g0057 922 MobiDBLite consensus disorder prediction 862 879 - -
Vvi2g0057 922 MobiDBLite consensus disorder prediction 782 803 - -
Vvi2g0057 922 CDD SP-RING_PIAS-like 321 368 - -
Vvi2g0057 922 Pfam MIZ/SP-RING zinc finger 320 368 IPR004181 GO:0008270
Vvi2g0057 922 MobiDBLite consensus disorder prediction 857 879 - -
Vvi2g0057 922 ProSiteProfiles Zinc finger SP-RING-type profile. 309 390 IPR004181 GO:0008270
Vvi2g0057 922 MobiDBLite consensus disorder prediction 893 922 - -
Vvi2g0057 922 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 405 IPR013083 -
Vvi2g0057 922 MobiDBLite consensus disorder prediction 415 439 - -
Vvi2g0057 922 MobiDBLite consensus disorder prediction 899 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0057 Vvi-Chr2 557577 570448 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0057 K04706 - vvi:100243215 1790.39