Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0056 ATGGCGGTCGAACTTGAGCGCAAGGCAGGTGTTGCTTTCATCGATGAGGACTACAAACTCGCCGTCGATCTCTTCTCCAAGGCCCTTAAGATCAGACCTAACAATGCCGAACTCCTCGCCAGCAGAGCTCAGGCGAACATCATGCTCCATGATTATCTTGAGGCTGTCGGCGATGCAATCAAGGCGATTCAGTTGGATCCTTCAATGGCGAAGGCGTATCTGCGGAAAGGCATTGCTTGTTTTAAGCTTGAAGAATATCAAACTGCCAAGGTCGCCCTTGAAAAAGGTGTTCGATTTGCACAAAATGATCCAAGGTTTGCCAAGTTGATTAAAGAATGTAACGATTGTATTGCCGAGCAATATGATATGAAATTGGGATGTATTTTCTTAAAAAGTTGGAAAAGAGTACTGATTATAGTGCCGTCCTCCCCAAGCATGCACACACGAATGAGCTTTACAAAGTTGGAAAATGCTAGTATAACTGTTGGACGTGGTGCATCCACAGCATTAGCAAAACCAAAATACAGGTTGCATGAATACTACCAGAAGCCTGAGGAAGTGGTTGTGACAATATTTGCAAAGGGTATACCAGAAAATAACGTGGTCGTTCACTTTGCTGTACAGACATTAAGTGTTGCCATTGAAGTTCCTGGTCTGACTCCATATTATCTTCATCTTCGATTATTTGGAAAGATCATACCTGATAACAGCAGATATGCAGTAATGTCCACCAAAGTGGAGATCCGCCTTGCCAAAGCTGAGGCCCTGAACTGGCCATCTCTTGAAATTAGCGACAAAGGTACAGATCCCAAAAAGCTTCAAATGCCATCTGCTGTAGATCAGAGGCCTACCAATCCATCTTCAAAAGCAAAAGTGATAGATTGGGATAAGTTGCAGGCCCAAATTGAGGAGGAGGAAAAAGAAGAGGAGTTGAAAGATGATGCAACTAGAAATGCAGACACTCAGAGGACTATGAACAAAAAAACTTGTGAGCCTCATCTGTCTCCTTATCCTTAA 1017 0.4336 MAVELERKAGVAFIDEDYKLAVDLFSKALKIRPNNAELLASRAQANIMLHDYLEAVGDAIKAIQLDPSMAKAYLRKGIACFKLEEYQTAKVALEKGVRFAQNDPRFAKLIKECNDCIAEQYDMKLGCIFLKSWKRVLIIVPSSPSMHTRMSFTKLENASITVGRGASTALAKPKYRLHEYYQKPEEVVVTIFAKGIPENNVVVHFAVQTLSVAIEVPGLTPYYLHLRLFGKIIPDNSRYAVMSTKVEIRLAKAEALNWPSLEISDKGTDPKKLQMPSAVDQRPTNPSSKAKVIDWDKLQAQIEEEEKEEELKDDATRNADTQRTMNKKTCEPHLSPYP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0056 338 PANTHER PROTEIN SGT1 HOMOLOG 1 331 IPR044563 GO:0051087
Vvi2g0056 338 Coils Coil 298 318 - -
Vvi2g0056 338 CDD p23_CS_SGT1_like 179 262 - -
Vvi2g0056 338 Gene3D Tetratricopeptide repeat domain 1 124 IPR011990 GO:0005515
Vvi2g0056 338 ProSiteProfiles CS domain profile. 173 262 IPR007052 -
Vvi2g0056 338 Pfam CS domain 178 252 IPR007052 -
Vvi2g0056 338 SMART tpr_5 2 35 IPR019734 GO:0005515
Vvi2g0056 338 SMART tpr_5 70 103 IPR019734 GO:0005515
Vvi2g0056 338 SMART tpr_5 36 69 IPR019734 GO:0005515
Vvi2g0056 338 SUPERFAMILY TPR-like 5 148 IPR011990 GO:0005515
Vvi2g0056 338 Coils Coil 83 103 - -
Vvi2g0056 338 MobiDBLite consensus disorder prediction 296 327 - -
Vvi2g0056 338 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Vvi2g0056 338 Gene3D - 168 277 IPR008978 -
Vvi2g0056 338 SUPERFAMILY HSP20-like chaperones 178 269 IPR008978 -
Vvi2g0056 338 MobiDBLite consensus disorder prediction 266 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0056 Vvi-Chr2 537380 544068 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0056 K12795 - vvi:100265531 508.449