Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0055 ATGAAGTGCCGATCCGTAGCGTGCATCTGGTCCGGTGCTCCGCCGTACCACAGAATAACTGCCGCCGCAGTATTGACCAGGCCGCCGAGTCTCTACACCGGCGGATCCGATGGCTCAATCGTCTGGTGGAATCTATCCGGCACCGATTCCGACCCGGAAATTAAACCAATTGCTATGTTGTGTGGTCATGCTGCACCCCTAGCTGATCTCGGCATTTGTTTTCCTATTGTGGACAATTCAAGTAATGTGAAAGTAAAGTCTATTCCAGCTGATCATGGCGCTTTAATAAGTGCATGTACTGATGGTGTGCTGTGCACATGGAGCAGAGGGAGTGGACATTGCAGGCGCAGAAGGAAAATGCCACCTTGGGTGGGCAGTCCATCCATGATTCGAGCATTGCCTACCAACCCAAGATATGTATGTATTGCCTGTAGTTTCATGGATGCTGTCCATTTATTTGACCAACATTCTGTTGATTTGGTTGAAGGGGGTGAGGCTTCCTTGGATAGAGAGTCTCAATATAGAAAACCCCCAAAATGCACTGTAGTTATTGTAGATTCATATAGCCTTACTATTGTCCAAACTGTTTTTCATGGGAATTTGTCTATTGGGCCATTGAAGTTCATGGCTGTAATTTTGTCCCCTGAGAATTGTGAGATGCAATCCGCCCTCATGGTTGATCCATATGGTAAGCTGCAATCGGTTCCTATACTAAAGGACCCCACCTTAGGCGGGGAGAGTGGGGCTGGTTTGCATAAAAGTTCTTCTCATTTGGATACAACTATCTGGGAAGATGGATTGAGTGAGGGGGGTCCGGTGGTGTCAATTGCAACCCATGGACAGTTTTTTGTTCTTGTCTATAGAACCTGTTGTATATTTAGGCTATTGGCTAGTGGAACTGCAATTGGAAAGATTTCTTTTGTGGATAATCACCTCTGTTTCGAAGATGGTTCAACTCACTTGCACATTGTAGGGGGCATGTTTCTTGAAGGTAATGATGCTAGTAGTATGCCGAGGTCAGAAGATCCCTGTGACATAACTGAAGAAAATTTTATTGTGTGGAATGATAGAGGTTCAGCTATTGTGTATTCTGTATCATATTTGGACAATTTATTTAATTTTCAGCCTCTTTGTGAGATCCCTGCTGTTTCCCATCCCCATGATGCAAGGCTATCAATATCTTTCATCCAATTGAACCATTATCTTTTTCGAATTGAATCCGTTTGCTTTCACATTGAGGAACCTTTGCTGTGGAAACCTCTTGTTACAATCTGGTCTCTATATCAACAACATGATGACAATAGAAAGTTGTGTCCTCAATGCAAAATGGTTGGAAGAGGTGGTCTTTTTACAGACTCGGTTGTGGGCTTTGCTTCTTTTCATAAATCTGAGGGTCATGGGCATGATGTTGGTATAGAACCCACAGGCAGGGAGACTGAGTTAACTTCCCAGAAAAGTACAATTCCAAGTCTAGAAAAAATGAATAATATCTGCAGAGATGATGAAAAATATAGTTTTGTGCGGAAGGAGCAGGTTGTATCTTCTTCCATGGTTATCTCTGAAAACTTCCATACACCATATGCTGTTGTGTATGGCTTCTATAGTGGTGAAATAGAAGTTGCTCGATTTGATACATTTTTCCAACTACTAGAGTCACATGGTCAAAGTCCATGTGTTGAAGTGGATTCACATGCATCAAAACAATATTTTTTGGGACATACTGGTGCTGTACTATGTTTGGCTGCACATCGAATGGTGGGCAACTCCAACGGATGGAATTTTAATCATGTTTTAGTATCAGGAAGCATGGACTGCACGATTCGTGTATGGGATCTTGATACTAGCAATCTCATTACAGTGATGCACCAACACGTAGCTTCAGTACGCCAAATAATCCTTTGCCCACCTAGGACTGACCGTCCATGGAGTGATTGCTTTCTGTCTGTTGGGGAGGACTTTTGTGTTGCTCTCACTTCTCTTGAGACTTTGCGGGTGGAGAGGATGTTTCCTGGACACCCTAGCTATCCTGCAAAAGTTGTGTGGGATGGTGCTAGAGGTTATATCGCATGTCTCTGCCGGAACTATTCAGGGACATCTGATGCAGTAGATGTTTTGTTCATTTGGGACATGAAGACAGGTGTTCGAGAGCGCGTTCTTCGTGGGACAGCATCCCATTCAATGTTCGATAATTTTTTCAAAGGAATCAACATGAATTCCATTTCCGGCAGTGTATTGAATGGAGATACTTCAGCTTCCTCGTTACTTCTTCCAATAATTGAAGATGCAAGCTTGTTACAATCTCATTTTAAACATTCAGTGAAGGGGATCGCTTTGTCAAATACAATTACGACAAATATATCTGAGCCCAGTACTTCCCAAGCACATGTTAATGAAGGAAGCTCTATGAAACTAATATCCACTTCATCATCAGTCTTTCAAGGCTACAAGCATCCCGTCAAATGCTCTTGTCCATTCCCTGGAATTGCTACTCTGAGTTTTGACCTTGCATCCTTGATGTCTCATTGTCTGAAGCATGAGTTCATAGGAAATGGTGGTGATAAGCAAGACAATACCCATATGAGAGAACCGGGAACTGAGACACTGAAACCCCATCACATGACTGCAGATGATGGGTCTGATTTAAATGGGACCTTGAACAATACTATAGAAGGGCATGACTGGATTAGTTCACTTGAAAGATACTTACTCCAATTCTCCTTGTCCTTTTTGCACTTGTGGGATGTAGATTCTGAGCTTGATAAGTTGCTAATAACTGACATGAAGTTAGAGAGACCACAGAAATTTATTGTATCCCCTGGTTTCCAAGGGGACAGAGGTTCATTAACTTTGACATTCCCTGGTTTGGGTGCTAGCCTCGAGCTTTTGAAATCATCATCAGAGTTTTGTGCGATGAGGTCACTAACAATGGTGTCCCTTGCCCAACGCATAGTTAGCTTGTCTCACTCTAGTTCAGCAGGCTGCAGTGCTTTAGCAGCATTCTATACTCGGCATTTTGCAGAGAAAATTCCTGATATAAAACCACCTTCACTCCAGCTTTTGGTGAGTTTTTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCACGCTCTTTATTTCATTGTGCTGCTGCACGGGCTATTCCACCTCCCCTATGTAGTCGAAAAGCAATTGACCATACAAAACTTATGATCTCCACCAATAGCAAGAGGGCAAATGAAGATGGAAGTTCAAACATAGAAAATGCATATAGGGATGGTCTGAATTCTGATACACCCCCTGAAACACCAGGGGATTCTCAGGTTGAGGAATGTAAAATACTTGCATGGCTAGAATCATTTGAAGAGCAAGATTGGATTTCTTGTGTTGGGGGAACAAGCCAAGATGCAATGACATCTCATATTATCGTGGCAGCGGCACTGGCAATTTGGTATCCTAGCCTTGTTAAGCAAAATCTTGCTATGCTGACTGTTCATCCATTAATGAAGTTGGTTATGGCCATGAATGAGAAATATAGTTCCACAGCAGCAGAGCTCCTGGCAGAAGGTATGGAGAGTACATGGAAGGAGTGCATTGGTTCTGAAATACCTCGTCTGGTTGGGGATATATTCTTCCAAATAGAGTGTGTAAGTGGTACATCTGGCAATTCTGCGGCTCAAAATCCTGCTATCCCTGTCACTATTCGGGAGACTTTGGTTGGGGTTCTTCTTCCAAGCTTAGCCATGGCTGATATACCAGGGTTTCTAAGTGTAATAGAGAGCCAAATTTGGTCTACTGCATCTGATTCACCTGTTCATTTAGTATCCCTCATGACTCTCATCAGGGTTGTGCGTGGTTCTCCAAGAAACTTAATTCAGTCCCTTGATAAGGTGGTTAACTTCATTTTACAAACTATGGACCCTGGAAATTCAGTCATGCGCAGGACTTGCCTTCAAAGTTCAATGACAGCACTGAAAGAAGTTGTTCGTGTATTCCCTATGGTAGCACAGAATGACTCTTCAACACGTCTGGCTGTTGGGGATGCAATTGGAGAGATTAATAATGCTAGCATTCGGATATATGACTTGCAAAGTGTGACAAAAATAAAGGTTCTGGATGCAAGTGCTCCTCCTGGACTTCCAAGTTTGCTCTCAGGAGCTTCAGAAACAACACTGACCACTGCAATTTCTGCTCTGAGCTTTTCACCGGATGGAGAGGGGCTAGTTGCCTTTTCTGAGCATGGATTGATGATTAGATGGTGGTCCTTGGGGTCAGCATGGTGGGAGAAACTCGGTCGAAATTTCGTTCCTGTCCAATACACTAAACTGATTTTTGTTCCTCCCTGGGAGGGAATGTCACCTAATTCTTCTCGGTCAAGCGTAATGGCAAGCATACTGGGACATGATAGGCAGGCCAATTCACAGGAGAATACTAAGGGATCAGGGGACATGGACTGTTTGAAAGTCTTGATCCATAATATTGACCTCTCTTATCGGCTAGAATGGGTTGGTGAACGCAGAGTGCTAATCTTGAGGCATGGCCGTGAATTAGGCACATTCCAGTTATAA 4545 0.4328 MKCRSVACIWSGAPPYHRITAAAVLTRPPSLYTGGSDGSIVWWNLSGTDSDPEIKPIAMLCGHAAPLADLGICFPIVDNSSNVKVKSIPADHGALISACTDGVLCTWSRGSGHCRRRRKMPPWVGSPSMIRALPTNPRYVCIACSFMDAVHLFDQHSVDLVEGGEASLDRESQYRKPPKCTVVIVDSYSLTIVQTVFHGNLSIGPLKFMAVILSPENCEMQSALMVDPYGKLQSVPILKDPTLGGESGAGLHKSSSHLDTTIWEDGLSEGGPVVSIATHGQFFVLVYRTCCIFRLLASGTAIGKISFVDNHLCFEDGSTHLHIVGGMFLEGNDASSMPRSEDPCDITEENFIVWNDRGSAIVYSVSYLDNLFNFQPLCEIPAVSHPHDARLSISFIQLNHYLFRIESVCFHIEEPLLWKPLVTIWSLYQQHDDNRKLCPQCKMVGRGGLFTDSVVGFASFHKSEGHGHDVGIEPTGRETELTSQKSTIPSLEKMNNICRDDEKYSFVRKEQVVSSSMVISENFHTPYAVVYGFYSGEIEVARFDTFFQLLESHGQSPCVEVDSHASKQYFLGHTGAVLCLAAHRMVGNSNGWNFNHVLVSGSMDCTIRVWDLDTSNLITVMHQHVASVRQIILCPPRTDRPWSDCFLSVGEDFCVALTSLETLRVERMFPGHPSYPAKVVWDGARGYIACLCRNYSGTSDAVDVLFIWDMKTGVRERVLRGTASHSMFDNFFKGINMNSISGSVLNGDTSASSLLLPIIEDASLLQSHFKHSVKGIALSNTITTNISEPSTSQAHVNEGSSMKLISTSSSVFQGYKHPVKCSCPFPGIATLSFDLASLMSHCLKHEFIGNGGDKQDNTHMREPGTETLKPHHMTADDGSDLNGTLNNTIEGHDWISSLERYLLQFSLSFLHLWDVDSELDKLLITDMKLERPQKFIVSPGFQGDRGSLTLTFPGLGASLELLKSSSEFCAMRSLTMVSLAQRIVSLSHSSSAGCSALAAFYTRHFAEKIPDIKPPSLQLLVSFWQDESEHVRMAARSLFHCAAARAIPPPLCSRKAIDHTKLMISTNSKRANEDGSSNIENAYRDGLNSDTPPETPGDSQVEECKILAWLESFEEQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKQNLAMLTVHPLMKLVMAMNEKYSSTAAELLAEGMESTWKECIGSEIPRLVGDIFFQIECVSGTSGNSAAQNPAIPVTIRETLVGVLLPSLAMADIPGFLSVIESQIWSTASDSPVHLVSLMTLIRVVRGSPRNLIQSLDKVVNFILQTMDPGNSVMRRTCLQSSMTALKEVVRVFPMVAQNDSSTRLAVGDAIGEINNASIRIYDLQSVTKIKVLDASAPPGLPSLLSGASETTLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSAWWEKLGRNFVPVQYTKLIFVPPWEGMSPNSSRSSVMASILGHDRQANSQENTKGSGDMDCLKVLIHNIDLSYRLEWVGERRVLILRHGRELGTFQL* 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0055 1514 PANTHER RABCONNECTIN-3B, ISOFORM A 3 1514 - -
Vvi2g0055 1514 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Vvi2g0055 1514 SMART WD40_4 563 611 IPR001680 GO:0005515
Vvi2g0055 1514 SMART WD40_4 1377 1414 IPR001680 GO:0005515
Vvi2g0055 1514 SMART WD40_4 614 659 IPR001680 GO:0005515
Vvi2g0055 1514 SMART WD40_4 662 709 IPR001680 GO:0005515
Vvi2g0055 1514 SMART WD40_4 5 44 IPR001680 GO:0005515
Vvi2g0055 1514 SUPERFAMILY WD40 repeat-like 17 721 IPR036322 GO:0005515
Vvi2g0055 1514 Gene3D - 477 813 IPR015943 GO:0005515
Vvi2g0055 1514 MobiDBLite consensus disorder prediction 1067 1099 - -
Vvi2g0055 1514 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 620 IPR001680 GO:0005515
Vvi2g0055 1514 SUPERFAMILY ARM repeat 977 1349 IPR016024 -
Vvi2g0055 1514 Gene3D - 3 175 IPR015943 GO:0005515
Vvi2g0055 1514 MobiDBLite consensus disorder prediction 1067 1085 - -
Vvi2g0055 1514 SUPERFAMILY WD40 repeat-like 1329 1417 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0055 K24738 - vvi:100260315 3061.17