Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0054 ATGGGCTATGGTGGAATGGTGTGGGGTCTGGTCTTGTGGTGTGTTTTGGCTAGCCGGAATGGTGTAGCCATGGAGGATGAGAGGTTGTTGGGGTTGGGTCATGATTATGGAGAGGCCCTTGGGAAGGCCATTTTGTTCTTTGAAGGGCAGCGGTCTGGGAAGCTGCCGTCCAGCCAGCGGGTGAAGTGGAGGGGAGACTCCGCGCTCTCTGATGGCATGCCTGAAAATGTGAAATTGATTGGAGGATACTATGACGCCGGAGACAATGTCAAGTTTGGGTGGCCCATGGCGTTTAGTGTGAGCTTGTTGAGTTGGGCAGCTGTTGAGTACCGGAGAGAGATTTCTTCAGTCAAGCAGCTCACCTACCTTCTTCAAGCAATCCGCTGGGGAGCTAATTTCATACTGCGGGCTCATACTTCATCCACCACACTATATACTCAGGTTGGAGATGGAAACAACGACCACCAGTGCTGGGAGCGGCCCGAGGACATGGACACTCCTCGAACGCTATACAAGATAAATTCTACTTCACCAGGCACCGAGGCAGCAGCTGAGGCTGCGGCCGCTCTTTCTGCTGCCTCAATTGCCTTTAAAGGGGTTGATTCCAACTACTCTGCAACGCTATTAAAACGATCAAAGTTGCTGTTTGAATTTGCAGACAAGTACAGAGGATCTTACCAAGCTTCTTGCCCTTTCTACTGCTCTTACTCAGGTTATCAGGACGAGCTGTTATGGGCTGCGGCTTGGCTGTACAAGGCTAGTGGAGAAACCAGGTACTTGAACTATGTCTCAAGCAACCAAGGGTGGAGTCAGGCAGTGACAGAGTTCAGTTGGGACAACAAATTTGTGGGAGCTCAGACATTACTAGCCAAGGAATTCTTTGACGGGACAAAGGATTTGGGAAAGTTTAAGACCGACGCAGACTCATTTGTATGTGCATTGATGCCGGGGAGTAGCTCTGTGCAGATTAGAACAACTCCAGGTGGGCTTCTGTACACCAGAGACGGTAACAATTTACAGTATGTAACGACCTCTTCCATGGTGCTACTCATCTACTCTAAAACACTAGCCGCAGCTCAAATCGGAGGAGTCCAATGTGGCTCTGCACATTTCCCCACCTCTCAAATCAGAGCCTTTGCAAAATCACAGGTGGACTACATACTAGGTAACAACCCCAAGAAGATGTCATACATGTTGGGTTACGGAAGCAAATATCCAACGCAATTACACCATAGGGGTGCATCCATCCCCTCAATCCATGCTCTTCCAGACAAGGTGGGCTGCAACCAGGGCTACTCAAGTTGGTATTCCTCTACCGAACCCAACCCAAACACCCATGTGGGTGCAATTGTGGGAGGCCCCAATTCTGATGATCAATTCAGTGATGTGAGATCAGACTACTCTCACTCTGAACCCACCACCTATGCCAATGCAGCCTTTGTGGGTTCAGTGGCTGCCTTGGTTCACAAAACCAGAGCAGAGCTTCCGCGCGCAGATGGGGCAGATGAATAG 1512 0.5007 MGYGGMVWGLVLWCVLASRNGVAMEDERLLGLGHDYGEALGKAILFFEGQRSGKLPSSQRVKWRGDSALSDGMPENVKLIGGYYDAGDNVKFGWPMAFSVSLLSWAAVEYRREISSVKQLTYLLQAIRWGANFILRAHTSSTTLYTQVGDGNNDHQCWERPEDMDTPRTLYKINSTSPGTEAAAEAAAALSAASIAFKGVDSNYSATLLKRSKLLFEFADKYRGSYQASCPFYCSYSGYQDELLWAAAWLYKASGETRYLNYVSSNQGWSQAVTEFSWDNKFVGAQTLLAKEFFDGTKDLGKFKTDADSFVCALMPGSSSVQIRTTPGGLLYTRDGNNLQYVTTSSMVLLIYSKTLAAAQIGGVQCGSAHFPTSQIRAFAKSQVDYILGNNPKKMSYMLGYGSKYPTQLHHRGASIPSIHALPDKVGCNQGYSSWYSSTEPNPNTHVGAIVGGPNSDDQFSDVRSDYSHSEPTTYANAAFVGSVAALVHKTRAELPRADGADE* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0054 503 FunFam Endoglucanase 32 492 - -
Vvi2g0054 503 SUPERFAMILY Six-hairpin glycosidases 34 490 IPR008928 GO:0005975
Vvi2g0054 503 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 460 478 IPR033126 -
Vvi2g0054 503 Gene3D - 32 498 IPR012341 GO:0005975
Vvi2g0054 503 PANTHER ENDO-1,4-BETA-GLUCANASE 14 490 - -
Vvi2g0054 503 Pfam Glycosyl hydrolase family 9 36 482 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0054 Vvi-Chr2 516045 519370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0054 10 488 Glycoside Hydrolase AT4G23560 70.981 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0054 - - vvi:100255237 1015.76