Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0052 ATGGCAGATCTCTGTAGATCTTCGACGTTCTTCTCCGATCAGAACCTCTGCAACGCAGACATCATCGGCTCCTCAGAGGCCAGAGCCAGAATCGAAGTGGCAGTTCTCAATTTTCTCAAGATCTTGAATTCTCCTTCTCCTGCTATCTCCGATCTCCCTCTGATCAGTAGAAGGTGGAGTAACAGTAGGGTGAATCGAGGATTGCTGACTGAGGTTTCTTGCATTTTCCTCTCGCATTCCTTTTGTACAAGGTCTTTGATGAGGCCAAATGCTGCTAAAGCCTTTGTTAGAGTGTGGAAGGTTGTGGAGATGTGTTTCCAGATTCTGGTACAGGAAAAGAGGGTGACTCAGAGGGAGCTCTTCTACAAATTGCTTTGTAGTTCTCCACAGTATTTCACTTGTCAGTTACAGGTTAACAGGACAATCCAAGATGTTGTGGCCTTGCTTCGGTGCAGTCGATATAGTCTGGGGATCATGGCATCTAGCAGAGGAGCTGTAACAGGCCGGCTTTTGTTGCAGGCATTCATCTCTGAAACTGTGGACTGTTCTGCATGTGGGTCATCTGGGCACGCCATCTCTGGTGACATGAATTTATTAGAGAGGATGGTTATGAAGACAGATGCACGGTATATCATTGTGGTGGAAAAGCATGCGATATTCCAGCGGCTGGCTGAGGATCGAGTGTTCAATCAAATTCCAAGCATTCTTATCACGGCCAAAGGCTACCCAGATATTGCCACAAGGTTCCTGCTGTACCGAATGAGCAGAGCTTTCCCTGATTTGCCCATTTTGGCACTGGTTGACTGGAATCCAGCTGGACTGGCTATACTCTGCACCTTCAAATTTGGAAGCATTGGGATGGGCCTCGAGGCATACAGATACGCTTGTAATGTCAAGTGGCTAGGGCTTCGAGGGGATGATTTACAGCTTATACCTGAAGAATCCTTGATTCCATTGAAGCCACGAGACCTTCAAATTGCTAAGAGCTTGAAGTCCTCAGAGATCTTAGAGGAGAACTACAGAAATGAATTAGAAGTGATGGTTCAGAGTGGCAGACGAGCAGAAATTGAAGCCCTCTACTTCCGTGGATACAATTTCTTGGGTAAATACATAGCAAAGAAAATAGTACAAGCCAATTACGTCTAA 1146 0.4599 MADLCRSSTFFSDQNLCNADIIGSSEARARIEVAVLNFLKILNSPSPAISDLPLISRRWSNSRVNRGLLTEVSCIFLSHSFCTRSLMRPNAAKAFVRVWKVVEMCFQILVQEKRVTQRELFYKLLCSSPQYFTCQLQVNRTIQDVVALLRCSRYSLGIMASSRGAVTGRLLLQAFISETVDCSACGSSGHAISGDMNLLERMVMKTDARYIIVVEKHAIFQRLAEDRVFNQIPSILITAKGYPDIATRFLLYRMSRAFPDLPILALVDWNPAGLAILCTFKFGSIGMGLEAYRYACNVKWLGLRGDDLQLIPEESLIPLKPRDLQIAKSLKSSEILEENYRNELEVMVQSGRRAEIEALYFRGYNFLGKYIAKKIVQANYV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0052 381 Pfam Type IIB DNA topoisomerase 93 158 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Vvi2g0052 381 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 25 380 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g0052 381 Gene3D - 162 381 - -
Vvi2g0052 381 CDD TOPRIM_TopoIIB_SPO 209 366 IPR034136 -
Vvi2g0052 381 Gene3D - 14 161 IPR036388 -
Vvi2g0052 381 SUPERFAMILY DNA topoisomerase IV, alpha subunit 92 380 IPR036078 GO:0003677|GO:0005694
Vvi2g0052 381 PRINTS SPO11 homologue signature 273 292 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vvi2g0052 381 PRINTS SPO11 homologue signature 82 98 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vvi2g0052 381 PRINTS SPO11 homologue signature 225 240 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vvi2g0052 381 PRINTS SPO11 homologue signature 127 147 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vvi2g0052 381 FunFam Meiotic recombination protein SPO11-2 17 161 - -
Vvi2g0052 381 PRINTS DNA topoisomerase VI subunit A family signature 135 152 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g0052 381 PRINTS DNA topoisomerase VI subunit A family signature 268 284 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g0052 381 PRINTS DNA topoisomerase VI subunit A family signature 211 228 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g0052 381 PRINTS DNA topoisomerase VI subunit A family signature 235 256 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g0052 381 PRINTS DNA topoisomerase VI subunit A family signature 153 168 IPR002815 GO:0003677|GO:0003918|GO:0005694
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0052 Vvi-Chr2 505013 508954 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0052 K10878 - vvi:104881111 741.88