Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0049 ATGGCCATGGCTGCTCCCATTCACGCTTCTTCAATTACCAAAATTTCCTCCACCAAACAAATCTATCCTTTTACTTCACACTATCGTCCTTCTTCACTCGTTCTTTCTCACACTCTGAGTCTCCGTTCAACGCTACGGCGGCCGATGGTCGCCGCCGCGGCCACCACGGCTGTCGAAGCGGAGCCGCGTTCGAACTCCACGGCTCCCTCCAAATCTTTGCCCTTCCGAGTCGGGCACGGCTTCGATCTTCATCGGTTGGAGCCCGGGTACCCTCTCATCATTGGCGGCATTGATATTCCTCACGATAGAGGCTGCGAGGCTCACTCGGATGGTGATGTGCTGCTTCATTGCGTTGTTGATGCGATTTTGGGTGCTTTGGGGCTTCCTGATATCGGCCAGATTTTCCCGGATTCGGATCCGAAATGGAAGGGAGCTCCATCCTCTGTTTTTATCAAAGAAGCGGTTAGACTTATGCATGAAGCAGGCTATGAGATTGGAAATTTAGATGCCACTTTGATTCTTCAAAGACCCAAACTAAGCCCGCACAAGGAGGCTATCAGGTCGAACTTATCACAACTTCTTGGGGCAGACCCTTCTGTGGTAAATCTGAAAGCTAAAACTCATGAGAAGGTTGACAGCCTTGGGGAAAATCGGAGTATTGCAGCTCACACTGTGGTTCTTCTTATGAGGAAGTAG 696 0.5043 MAMAAPIHASSITKISSTKQIYPFTSHYRPSSLVLSHTLSLRSTLRRPMVAAAATTAVEAEPRSNSTAPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRSNLSQLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0049 231 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 109 124 IPR020555 GO:0008685
Vvi2g0049 231 FunFam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 72 231 - -
Vvi2g0049 231 SUPERFAMILY IpsF-like 74 230 IPR036571 GO:0008685|GO:0016114
Vvi2g0049 231 Gene3D - 72 231 IPR036571 GO:0008685|GO:0016114
Vvi2g0049 231 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 14 231 IPR003526 GO:0008685|GO:0016114
Vvi2g0049 231 CDD MECDP_synthase 76 228 IPR003526 GO:0008685|GO:0016114
Vvi2g0049 231 Pfam YgbB family 75 228 IPR003526 GO:0008685|GO:0016114
Vvi2g0049 231 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 75 230 IPR003526 GO:0008685|GO:0016114
Vvi2g0049 231 NCBIfam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 76 230 IPR003526 GO:0008685|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0049 K01770 - vvi:100250076 438.343