Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0048 ATGGGGTACATGAGTAATCAACCGCAGTTGTTGTCCAAGATCGCAACCGACAATGGCCATGGCGAAAATTCTCCTTATTTTGATGGGTGGAAGGCATATGATAGCGATCCATATCATCCTATCGAAAACCCTGGGGGGGTTATCCAGATGGGTCTTGCAGAAAACCAGCTTTCCTTTGATATAATTGAAGAGTGGCTTCTGAAGAACCCAAAAGCTTCCATTTGTACTGTGGAAGGAATGAGCGAATTCAGGGATGTTGCTATCTTTCAGGACTATCATGGCCTAAAAGAGTTCAGAAATGCTGTGGCCAAGTTTATGGGAAAAGTGAGAGGAGATAGAGTCGTATTCGATCCCGACCGCATTGTAATGAGCGGTGGAGCCACCGGCGCTCATGAGCTGGTCACCTTCTGCTTGGCTGATCCTGGTGATGCATTCCTGGTCCCCACGCCTTACTACCCAGGATTTGATAGAGACTTGAGGTGGAGAACAGGAGTGCAACTCCTTCCAGTTGTTTGCGAAAGCTCTAACGATTTCAAGATTACCAGAGAAGCATTGGAAGCGGCATATGAGAAAGCCCAAGAGGACAACACCAAAGTGAAAGGCTTGCTCATAACCAATCCATCAAACCCGTTGGGGACAGTTCTGGACAGGGAGACACTGAAAAGTCTAGTGAGCTTCGTCAATGAAAAAAACATCCACCTCATCAGTGACGAAATATACGCTGCCACCGTCTTCAGCTCACCCGGCTTCATTAGCGTCTCAGAGATAATAGATGAAATGGAATGCAACCCTGACCTCATCCACATCGTCTATAGTCTCTCCAAGGACATGGGCTTTCCTGGATTTAGAGTCGGCATTGTGTATTCATACAACGATGATGTAGTGAACATCGGCCGCAAGATGTCGAGCTTCGGACTGGTTTCCTCACAGACCCAACACCTAATCGCATCAATGCTATCAGATGATGAGTTTGTTGAGAGCTTCATTACCAAGAACTCAGAGAAGCTGGCCACAAGGTATAAGACCTTCTCTAGGGGACTATCCCAAGTGGGCATTGGCTGTCTTAAGAGCAATGCGGGTCTCTTTTTCTGGATGGACTTGCGTAGACTCCTCAAGGAGCCGACAGTTGAGGCTGAGATGGCACTGTGGCGTCTGATAATCAATGAAGTCAAGCTCAATGTTTCACCTGGCTCATCCTTCCATTGCTCGGAGCCTGGCTGGTTTAGGGTCTGCTTTGCAAACATGGATGATGAAACCATGGAAGTGGCCCTACGAAGGATCCGGAACTTTGTGCTTAAAGCCAAAGAAAAGGAGGTGTCTGCCAAGAGACAGCGTTGGCAAAACAATCTCAAAGTCCGCTTATCATTCAGAGGATTGGATGAGCCGCACTTGATGTCCCCCCACTCTCCTATTCCTCAATCACCCCTTGTCCGAGCAAGGACTTGA 1446 0.4779 MGYMSNQPQLLSKIATDNGHGENSPYFDGWKAYDSDPYHPIENPGGVIQMGLAENQLSFDIIEEWLLKNPKASICTVEGMSEFRDVAIFQDYHGLKEFRNAVAKFMGKVRGDRVVFDPDRIVMSGGATGAHELVTFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLLPVVCESSNDFKITREALEAAYEKAQEDNTKVKGLLITNPSNPLGTVLDRETLKSLVSFVNEKNIHLISDEIYAATVFSSPGFISVSEIIDEMECNPDLIHIVYSLSKDMGFPGFRVGIVYSYNDDVVNIGRKMSSFGLVSSQTQHLIASMLSDDEFVESFITKNSEKLATRYKTFSRGLSQVGIGCLKSNAGLFFWMDLRRLLKEPTVEAEMALWRLIINEVKLNVSPGSSFHCSEPGWFRVCFANMDDETMEVALRRIRNFVLKAKEKEVSAKRQRWQNNLKVRLSFRGLDEPHLMSPHSPIPQSPLVRART* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0048 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 298 321 - -
Vvi2g0048 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Vvi2g0048 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Vvi2g0048 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 266 290 - -
Vvi2g0048 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Vvi2g0048 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Vvi2g0048 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Vvi2g0048 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Vvi2g0048 481 Coils Coil 175 202 - -
Vvi2g0048 481 CDD AAT_like 89 428 - -
Vvi2g0048 481 SUPERFAMILY PLP-dependent transferases 20 431 IPR015424 -
Vvi2g0048 481 Gene3D Aspartate Aminotransferase, domain 1 36 426 IPR015422 GO:0003824
Vvi2g0048 481 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 70 321 - -
Vvi2g0048 481 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 272 285 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vvi2g0048 481 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 11 431 - -
Vvi2g0048 481 Pfam Aminotransferase class I and II 48 427 IPR004839 GO:0009058|GO:0030170
Vvi2g0048 481 Gene3D - 70 321 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0048 Vvi-Chr2 472599 475056 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0048 K20772 - vvi:100263876 974.926