Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0047 ATGAAGAAAGTGGTGTTGAAATTGGACTTACACGATGACAAAGCCAAGCAAAAGGCCATGAAAGCAGTGTCAAGTCTATCAGGAGTCAACTCTATAGCCATGGACATGAAGGATAAGAAATTAACAGTGGTGGGAGATGTAGACCCAGTAGATATCGTGAGCAAATTAAGAAAAGGGTGGCACACCGATATTCTAACTGTTGGGCCTGCAAAGGAGGAGAAGAAGGAAGATGGAAAGAAAGACGAAGGGAAGAAAGATGAGAAGAAGGATGGAGACAAGAAGAAAGATACAGAAAAGCAGATTCAAGAGCTTGTGGATGCCTACAAAGCATACAATCCTCATCTCACCAGATATTACCATGTCCAAAGTGCAGAGGAAAATCCAAACGCTTGTGTTATATGCTGA 405 0.4198 MKKVVLKLDLHDDKAKQKAMKAVSSLSGVNSIAMDMKDKKLTVVGDVDPVDIVSKLRKGWHTDILTVGPAKEEKKEDGKKDEGKKDEKKDGDKKKDTEKQIQELVDAYKAYNPHLTRYYHVQSAEENPNACVIC* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0047 134 MobiDBLite consensus disorder prediction 67 98 - -
Vvi2g0047 134 Pfam Heavy-metal-associated domain 9 58 IPR006121 GO:0046872
Vvi2g0047 134 Gene3D - 1 73 - -
Vvi2g0047 134 ProSiteProfiles Heavy-metal-associated domain profile. 1 68 IPR006121 GO:0046872
Vvi2g0047 134 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 2 131 - -
Vvi2g0047 134 SUPERFAMILY HMA, heavy metal-associated domain 1 58 IPR036163 GO:0046872
Vvi2g0047 134 MobiDBLite consensus disorder prediction 65 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0047 Vvi-Chr2 459945 460868 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0047 - - vvi:100258716 227.254