Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0041 ATGTATTCTCTACAATCGCTTCCCCTCATTTCTTCTTCTTCTGTTCATAGGCCAGCGCCTGCAAAGCAACCCCGATTAGCTGAGCCCAGAGACAAATATCCCCACATTCACACACTTTCCGATTCCTTAACGGCCGTGCGTGTGTTGAGTTCATGCGCTGCAAACAGGGACCTGAGACTAGGCTCTTGCATTCACACCAACATACTCAAGTCTGGGCTCCACACAAATGTCTTTGTCGCCAATTCCCTCATGGATATGTACGCAAAATGTGGGCGTATAGAGGATGCTGCAAAATTGTTTGATCATATGCCTGACAAAACTGTGGTATCATGGACATCAATGATGTCTGGTCACTGCCAAAGAGGAGCTTTTGATGAAGTGATATCCATCTTTTGGCGGATGTTGGAGACCCTGCAGCCCAATGAATACACTCTAGCAGTGATTCTACAAGCTTGCGCCCAAAAACGGGACTTGAAATTGGTTCAATTGATCCATTGTCACATTATAAAAACCGGGTTTGTGATGGATGCTTTCTTGCAGAATTCTTTGATTGATGGGTACACAAAATCTGGGACACTGGTGGCTGCAGAGAAGCTGATGAAGAGATTGATTTGTAGGGATGTTGTGTCTTGGACTTCAGTCATTTCAGGTTGTGTACTCAATGGAATGGTGGAGAAGGCCCTTCTCTTCTTCTTTGAGATGCAGGAAGATGGGGTCTCACCAAATACGGTAACAATTCTCAGCATCTTGCAGGCTTGCTCTTTGATTAATGAATGGCAAGTTTTTCAGTGGGTTCATGGCTTGGTTATGAAAGCGGAATGGCGAGAAAATGTTTTCGTGATGAATTCCCTTGTTGAGATGTATTCCATTAATGGATATTTCAAGGAAGGATTTCAGATTTTTTGCAACTTCTGTTTCGAGGGTGACGGCCAGTATCTTAGTACAGAGACGATAGCCACGCTTCTGCAGGGATGCAGCCATTCTAAGTGTCTGAAGCTTGGAGAGCAGATTCATGGGTACCAGATTAAACATGGGTTCTTTCCTTGCACCATTGTTGAAAATTCTCTGATTTACATGTACGCAGAAAATGAAAGAGACGATGCAGCTTTTCAACTCTTCAGGAAGATGAGCTGCAGGGACATAGTTTCATGGAATACCATGATTTCATCCCTTGTAAAGGGAAGCAGTTCCTATCAGGCCTTGATGCTGCTGAGTGAGGTTCACAGCAATGGTGGATCTGATATGATTTACCCGGATTTTGTTACAATATTGGCATCAATTCAAGCCTGCTCAAGCTTGGCATCCCTGCAACTAGGTCAAGTAATTCATGGATACATAACCAGAGCAGGTTTGATTTGTGATATTTTTGTCCAGAATTCACTGGTGGACATGTATGGAAAATGTGGCAGGTTGCATTTAGCTGAGAAAGTCTCTGAGGAAATGCCTGTAAGAGATCTGGGTTCATGGAATTCACTCATTGCTGCATATGGGATCAATGGAAATGGAATCTCTGCCCTGAATGTCTTCAAGCAACTGAAGAACACAGGTGCCCACCGGCCAAATGCAATTACATTCACCAACATTCTCTCAGCTTGCGCTCATGCAGGGCTTGTAGCAGAAGGCTTTGAAATATTCAAGAGCATGAAGAGAGAGTACAGCCTGGAGCCAAGAATCGAACACTTTGCCTGTATGGTTGATCTCTTGGGGAGGGCAGGGAGGCTTGAAGAGGCAGAAGCTTTCATTCAGAAGATGCCATTTGAGCCGGGTCCAGAAGTGTGGGGTGCCTTACTGGGTGGTTGTGGACTCTTTGGAAACCTAGATATAGCTGAAAGGGTAGCAAAGAAACTTTATATTTTGGAGCCGAAGAGCAGAGCTTGGAGAGTTGCATTATCAAATGTTTATGCAAGTGTCAACAAATGGGAGGATGCCGCAAAGGTGAGAGCAGAAATGAGAAGATCTGAAGAACTGCAGAAGGAAGGTGGGTGGAGCAGTGTGGAGGTGAGAGGGCAAGAGTTCCGGTTTATGGTAGGTGATACAATGCATCCAGAGGCTAGGATGGTCTATGCAGTTTTGAAAGGAATAAATGAACATATCAGAGATGCTTGCAGAATAGTCTGA 2118 0.4452 MYSLQSLPLISSSSVHRPAPAKQPRLAEPRDKYPHIHTLSDSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLETLQPNEYTLAVILQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNGMVEKALLFFFEMQEDGVSPNTVTILSILQACSLINEWQVFQWVHGLVMKAEWRENVFVMNSLVEMYSINGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHGFFPCTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLSEVHSNGGSDMIYPDFVTILASIQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVRDLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITFTNILSACAHAGLVAEGFEIFKSMKREYSLEPRIEHFACMVDLLGRAGRLEEAEAFIQKMPFEPGPEVWGALLGGCGLFGNLDIAERVAKKLYILEPKSRAWRVALSNVYASVNKWEDAAKVRAEMRRSEELQKEGGWSSVEVRGQEFRFMVGDTMHPEARMVYAVLKGINEHIRDACRIV* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0041 705 Gene3D Tetratricopeptide repeat domain 38 137 IPR011990 GO:0005515
Vvi2g0041 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 551 IPR002885 -
Vvi2g0041 705 FunFam Pentatricopeptide (PPR) repeat-containing protein-like 276 432 - -
Vvi2g0041 705 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 456 684 - -
Vvi2g0041 705 FunFam Pentatricopeptide (PPR) repeat-containing protein-like 138 275 - -
Vvi2g0041 705 Gene3D Tetratricopeptide repeat domain 504 676 IPR011990 GO:0005515
Vvi2g0041 705 Gene3D Tetratricopeptide repeat domain 280 432 IPR011990 GO:0005515
Vvi2g0041 705 Gene3D Tetratricopeptide repeat domain 138 277 IPR011990 GO:0005515
Vvi2g0041 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Vvi2g0041 705 NCBIfam pentatricopeptide repeat 523 555 IPR002885 -
Vvi2g0041 705 NCBIfam pentatricopeptide repeat 209 243 IPR002885 -
Vvi2g0041 705 NCBIfam pentatricopeptide repeat 81 105 IPR002885 -
Vvi2g0041 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 316 703 IPR046960 GO:0003723|GO:0009451
Vvi2g0041 705 Pfam PPR repeat family 106 153 IPR002885 -
Vvi2g0041 705 Pfam PPR repeat family 206 253 IPR002885 -
Vvi2g0041 705 Pfam PPR repeat 382 411 IPR002885 -
Vvi2g0041 705 Pfam PPR repeat 523 551 IPR002885 -
Vvi2g0041 705 Pfam PPR repeat 459 483 IPR002885 -
Vvi2g0041 705 Pfam PPR repeat 488 514 IPR002885 -
Vvi2g0041 705 Pfam PPR repeat 354 380 IPR002885 -
Vvi2g0041 705 Pfam PPR repeat 563 584 IPR002885 -
Vvi2g0041 705 Pfam E motif 604 666 IPR046848 -
Vvi2g0041 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Vvi2g0041 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0041 Vvi-Chr2 422317 424434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0041 41 699 Glycoside Hydrolase AT3G49170 30.627 7.61e-107 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0041 - - vvi:104881105 1415.21