Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0040 ATGGCGGATGTGGCAATGGGTGAAGCAGAGACCTTCGCTTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATAAATACCTTTTACAGCAACAAGGAGATTTTTCTTCGCGAACTCATCAGCAATGCCTCTGATGCATTAGATAAGATCCGATTCGAGAGCCTGACAGACAAGAGCAAGCTTGATGCTCAGCCAGAGCTTTTTATTAGGCTTGTTCCTGACAAGGTCAATAAGACCCTTTCAATCATTGATAGTGGCGTCGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGAACTATTGCACGATCCGGAACAAAAGAATTCATGGAGGCATTGCAGGCTGGGGCTGATGTGAGCATGATTGGGCAATTTGGTGTTGGGTTTTACTCGGCCTACCTAGTTGCCGAGAAGGTTATTGTGACAACCAAGCATAATGATGATGAACAGTACATTTGGGAGTCTCAAGCTGGTGGATCCTTCACAATCACCAGGGATGTTAATGGAGAACAACTGGGTAGAGGAACTAAGATCACACTCTTCCTCAAGGAAGACCAGATGGAATACTTGGAGGAGAGGAGGTTGAAGGACCTGGTGAAGAAGCACTCTGAGTTCATTAGCTACCCAATCTACCTCTGGACTGAGAAGACCACTGAAAAAGAGGTCAGTGATGATGAAGATGAGGAACCCAAGAAGGAAGAGGAGGGTGATGTTGAGGAAGTGGACGAGGAGAAGGAAACCAAGTCCAAGAAGAAGAAGGTGAAGGAGGTTTCTCATGAATGGCAACTTATTAACAAGCAAAAGCCCATTTGGTTGCGAAAGCCTGAGGAGATCACAAAGGAGGAATATGCCTCCTTCTACAAAAGCCTAACCAATGATTGGGAAGAGCATCTTGCTGTAAAGCACTTCTCCGTTGAAGGGCAACTAGAATTCAAGGCTATTCTTTTTGTTCCAAAGAGGGCTCCTTTTGATCTTTTCGACACCAGGAAGAAGATGAACAACATCAAGCTATATGTTAGGAGGGTGTTTATTATGGATAACTGTGAAGAGCTCATTCCTGAGTATCTTGGTTTCGTGAAGGGAGTTGTGGATTCAGATGATTTACCACTCAACATCTCTCGTGAAATGCTACAACAGAACAAGATCCTCAAGGTGATCAGAAAGAATCTTGTGAAGAAGTGTATCGAGATGTTCAATGAAATTGCCGAGAACAAGGAGGATTACAACAAATTCTACGAGGCATTCTCCAAGAACCTGAAGTTGGGAATTCATGAAGACAGCCAGAACAGGGCTAAGCTAGCTGAGCTGCTCAGGTACTACTCAACAAAGAGTGGTGACGAGTTGACGAGCTTGAAGGACTATGTGACAAGGATGAAAGAGGGCCAGAAAGACATCTATTACATTACTGGTGAGAGCAAGAAGGCTGTGGAGAACTCCCCCTTCTTGGAGCGGCTCAAGAAGAAGGGCTATGAAGTACTCTTCATGGTTGATGCCATTGATGAGTACGCTGTTGGGCAGTTGAAGGAGTATGATGGGAAGAAGCTGGTTTCTGCAACCAAAGAGGGCCTTAAACTTGAAGATGAGACGGAGGAAGAGAAGAAGAAAAAGGAGGAGAAGAAAAAGTCCTTTGAGAGCCTTTGCAAAACCATTAAGGACATTCTTGGAGACAAGGTGGAGAAAGTGGTTGTGTCCGAGAGAATTGTGGATTCGCCTTGCTGCCTGGTCACAGGAGAATATGGATGGACTGCTAACATGGAGAGGATCATGAAAGCTCAGGCCCTGAGAGACAGCAGCATGGGGTCTTACATGTCTAGCAAGAAGACGATGGAGATCAACCCAGACAATCCCATAATGGAGGAGCTGAGGAAGAGAGCTGAGGTAGATAAAAATGACAAGTCAGTGAAGGATTTGGTGCTGTTGCTCTTTGAAACTGCCCTCTTGACTTCTGGGTTCAGTCTTGATGACCCCAACACATTTGGAGCAAGAATTCACAGGATGCTGAAGCTGGGTCTGAGCATTGATGAGGATGAGGCTGGAGGTGATGACACTGAAATGCCACCACTGGAGGAGGAAGGAAACGAGGAGAGCAAGATGGAGGAAGTTGACTGA 2112 0.4569 MADVAMGEAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKVNKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTITRDVNGEQLGRGTKITLFLKEDQMEYLEERRLKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEDEEPKKEEEGDVEEVDEEKETKSKKKKVKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKLAELLRYYSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDETEEEKKKKEEKKKSFESLCKTIKDILGDKVEKVVVSERIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGSYMSSKKTMEINPDNPIMEELRKRAEVDKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGARIHRMLKLGLSIDEDEAGGDDTEMPPLEEEGNEESKMEEVD* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0040 703 Coils Coil 521 547 - -
Vvi2g0040 703 Gene3D - 8 233 IPR036890 -
Vvi2g0040 703 CDD HATPase_Hsp90-like 19 207 IPR020575 -
Vvi2g0040 703 Hamap Chaperone protein HtpG [htpG]. 7 669 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi2g0040 703 SUPERFAMILY Ribosomal protein S5 domain 2-like 267 522 IPR020568 -
Vvi2g0040 703 SMART HKATPase_4 32 187 IPR003594 -
Vvi2g0040 703 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 10 700 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi2g0040 703 FunFam Heat shock protein 90 alpha 435 521 - -
Vvi2g0040 703 Pfam Hsp90 protein 189 697 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi2g0040 703 FunFam Heat shock protein 90 alpha 522 673 - -
Vvi2g0040 703 Gene3D - 266 434 - -
Vvi2g0040 703 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 186 IPR003594 -
Vvi2g0040 703 Coils Coil 232 252 - -
Vvi2g0040 703 PRINTS 90kDa heat shock protein signature 193 211 IPR020575 -
Vvi2g0040 703 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Vvi2g0040 703 PRINTS 90kDa heat shock protein signature 98 115 IPR020575 -
Vvi2g0040 703 PRINTS 90kDa heat shock protein signature 80 97 IPR020575 -
Vvi2g0040 703 PRINTS 90kDa heat shock protein signature 175 192 IPR020575 -
Vvi2g0040 703 PRINTS 90kDa heat shock protein signature 123 145 IPR020575 -
Vvi2g0040 703 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Vvi2g0040 703 FunFam Heat shock protein 90 alpha 266 434 - -
Vvi2g0040 703 MobiDBLite consensus disorder prediction 222 243 - -
Vvi2g0040 703 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10 218 IPR036890 -
Vvi2g0040 703 MobiDBLite consensus disorder prediction 677 703 - -
Vvi2g0040 703 MobiDBLite consensus disorder prediction 220 250 - -
Vvi2g0040 703 Gene3D - 435 521 - -
Vvi2g0040 703 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi2g0040 703 PIRSF HSP90_HTPG 2 703 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi2g0040 703 Gene3D - 522 673 IPR037196 -
Vvi2g0040 703 MobiDBLite consensus disorder prediction 675 703 - -
Vvi2g0040 703 FunFam Heat shock cognate protein 7 233 - -
Vvi2g0040 703 SUPERFAMILY HSP90 C-terminal domain 546 668 IPR037196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0040 Vvi-Chr2 412621 415588 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0040 K04079 - vvi:100265661 1237.25