Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0038 ATGGAGCTGTCCAAAAGTCTCAGAACCGCTAGAGTTGTTGGGGTAGTCTCAGTGGTTGTAGTGCTGGTTTTGCTGAGCACAAATGGAGCTGAGAGCAGAAAACACTGGGTGTTCGATTATTTCGAGTACAGCGCAATAAACTGCAGAGCTCACAGCGCATCGTTGACAGATTTTGGCGGAGTAGGCGACGGGACAACGTCAAACACCAAGGCGTTTCAGGCGGCGATTGACCATCTGAGTCAGTTCGCATCCGACGGTGGATCCCAGCTTTTTGTTCCTCCTGGAAGGTGGCTCACGGGAAGCTTCAATCTCACTAGCCATTTTACTCTGTACCTCCATAAAGATGCAGTTCTTCTTGCTTCTCAGGATGAACATGAATGGCCTGTAATCGACCCCCTGCCGTCCTATGGTAGAGGAAGGGATACTCAAGGAGGGAGGTACATCAGCCTAATTTTCGGAACCAACCTCACTGATGTAGTGATAACAGGGGAAAATGGCACTATCGATGGGCAGGGCGCCCTCTGGTGGGCAAAGTTCCACAAGGGAGAGCTGAAATATACGCGACCTTACCTAATCGAGATTATGCACTCTGATAATGTTCAAATATCCAGTCTGACATTGGTGAACTCTCCTTCTTGGAATGTTCATCCTGTTTACAGCAGCAATGTTATCATTCAAGGACTTACCATCACTGCACCAGTCACCTCTCCAAATACTGACGGGATCAATCCAGATTCTTGCACAAATACTCGAATTGAGGACTGCTACATCGTCTCTGGAGATGATTGTATAGCAGTTAAGAGCGGTTGGGATGAATATGGGATTGCTTACGGGATGCCAACCAAACAGCTAGTGATCAGACGGCTCACCTGCATTTCCCCATTCAGTGCAACCATTGCATTGGGCAGTGAGATGTCCGGTGGGATCGAGGATGTCAGGGCTGAAGACATCCTAGCCATTGATACGGAATCAGGAGTAAGGATCAAAACTGCAGTAGGAAGGGGAGGGTATGTGAAGGACATATATGTGAGAAGCATGATCATGAAGACAATGAAATGGGCATTTTGGATGACTGGAAACTATGGCTCGCATGCTGATAATAACTATGATCCAAATGCACTGCCTGCAATCCAGGGGATCAATTACCGTGATATGGTGGCAGAGAATGTGACCATGGCAGGTAGACTAGAGGGGATTTCTGGTGATCCATTCACTGGAATTTGCATATCTAATGTGACAATTGGGTTGGCAAAGAAGGCAAAGAAAGCACCATGGACTTGTACTGATATTGCCGGGATCACAAGTGGCGTTGTTCCTCAGCCATGTGACCTGCTGCCGGACCAGGGACCGGAAAAAATTGTAGCCTGTAATTTTCCAACAGACTCCCTGCCCATTGATACAGTTGAAGTCCAGACCTGCTCTTACTGGGGAAAGTATTTGTAA 1443 0.4754 MELSKSLRTARVVGVVSVVVVLVLLSTNGAESRKHWVFDYFEYSAINCRAHSASLTDFGGVGDGTTSNTKAFQAAIDHLSQFASDGGSQLFVPPGRWLTGSFNLTSHFTLYLHKDAVLLASQDEHEWPVIDPLPSYGRGRDTQGGRYISLIFGTNLTDVVITGENGTIDGQGALWWAKFHKGELKYTRPYLIEIMHSDNVQISSLTLVNSPSWNVHPVYSSNVIIQGLTITAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSATIALGSEMSGGIEDVRAEDILAIDTESGVRIKTAVGRGGYVKDIYVRSMIMKTMKWAFWMTGNYGSHADNNYDPNALPAIQGINYRDMVAENVTMAGRLEGISGDPFTGICISNVTIGLAKKAKKAPWTCTDIAGITSGVVPQPCDLLPDQGPEKIVACNFPTDSLPIDTVEVQTCSYWGKYL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0038 480 PANTHER PECTIN LYASE-RELATED 21 466 - -
Vvi2g0038 480 Pfam Glycosyl hydrolases family 28 149 429 IPR000743 GO:0004650|GO:0005975
Vvi2g0038 480 Pfam Pectate lyase superfamily protein 55 110 IPR024535 -
Vvi2g0038 480 Gene3D - 41 434 IPR012334 -
Vvi2g0038 480 SUPERFAMILY Pectin lyase-like 42 465 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0038 Vvi-Chr2 378013 380000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0038 1 475 Glycoside Hydrolase AT3G61490 69.647 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0038 - - vvi:100255362 972.23