Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0034 ATGAAGGGGCTCGCCACCCACAGCGACGCTCTCCAATCCATCAAAACCCTTGTGCTGAAACGCCTATATCCGCAAGCCCTTAGAGCCTCAGCATCGCTCCTCCATCCTCCTCTCACTGATCAATCCTATGCCCTCTTCCTTAAATCAGGCTTCGCACTCGATGCCTTCCTCTCCAGCTTCATTGTCAACCGCTTTGCCATCTCAGGCGACTTCGCTCGCGCCCGCAGGTTCCTACTCGACACCCCATACCCCGACACAGTCTCCTGGAATTCTCTCATCTCTGGGTATGCTCGGTTTCGGCAACCCGGGCCCGTGTTCGACTTGTTCAATGGGTTGAGGCGATCCGGTCTGAGTCCTGATGAGTTCAGTTTGAGTTCTTTGGTCAAGGGGTGTGGTGTTCTTGAGCAAAATGAGGTTGCACATGGGGTTTGTTTGAAGATGGGGTTATTGAACGGTTTTGTGGTGAGTGGACTGCTGGATGGCTATGCGAAATTGGGTGATGTTGATTCAGCTGAGAAGTGTTTCAAAGAGTTTTATATTGCGGATTCTGTGGTTTGGACGGCTATGGTTTGTGGATTTGTTTGGAACGGAGAATTCGAGAAGGGGCGTGAGGTTTTTGTAGAGATGAGGGGTTTGGGTTTGGGTTTGGAGTTGAACGAGTTTAGCCTGACTAGTGTTCTTGGGGCACTGTCTGATGTTAGAGAGGGTGAACAGGTTTTTGGTTTAAGTGTTAAGATGGGTCTGTTATGCGGATGCTCAATTCATCTGAACAATGCATTGATGAATATGTATTCTAGGTGTGGGAGTAAATCCGATGCTATTAAAATGTTTGATGAAATGACTGAGCCGGATGTTGTTTCATGGACTGAGCGGATTGGTGCTGCTTATGACGCTATAGAAGCTTTTGAATTGTTTAGACTTGTGCTTTCAGGAAACATGGAAGTGAATGAGTATATGTTGATTAATGTTTTGTCTGCCATGAGGGAGCCAAAGTTGTTGAAATCTGGGAGGCAAATCCAAGGGCTTTGTCAAAAGGCTGGGTATTTGCTAGTGGCTTCTGTTAATAATGCATTGATTTTTATGTATGGGAAGTGTGGAGAGATGGTCGCTGCTAGGCACATTTTTGATGAAATGCTTTGTGGAGATTCCGTTTCATGGAATTCTCTGATTGCAGGGTATGCTGAGAATGGACTCATGAAACAGGCTCTTAAGGTGTTCTCTCAAATGCGTGATTATTTGCTACAACCCAATAAATATACTTTGGCTAGCATTCTAGAAGTAGCAGCAAACTCAAATTTTCCAGAGCAGGCAATGCAAATTCATTCATATATAGTCAAACTGGGATTCATAGTAGATGATTCAATGTTGTCTTGTCTAATAACAGCATATGGTAAATGCAATATGATTTGTGAATCAAAGAGGGTATACAGTGATATTAGTCAAATAAATGTGTTGCATCTTAATGCAATGGCAGCCACACTTGTCCATGCTGGTTGCCATGCTGATGCCCTCAAATTGTTCCAAACAGGATGGCGCTTGCATCAGGAAGTGGACTGCATAACATTAAGTATAGTACTTAAAGCATGTGGTGCTTTGACAGATTTGGAATATGGTAGAAATATACATTCTATGGCCCTTAAATCTGGAATGAGTCAGGATAACTTTGTTGAAAGTGCTGTTATCGATGTGTACTGTAAGTGTGGAACTGTGGATGAAGCTGCAAAAACTTTTATGAATGTATCTAAAAACAATTTAGTTGCTTGGAATGCCATGGTGATGGGATATGCTCAGCATGGTTGTTATCATGAAGTTTTCGAGCTATTTAATAAGATGCTTGAATTGGGGATACAACCTGATGAGATAACTTATCTTGGAGTGCTTAACTCATGTTGTCATGCAGGGCTAGTGAATGAAGCGCATACTTACCTAAGCTCGATGTTAGAACTTCATGGAGTGGTCCCATGTTTAGAACACTATGCCTGCATGATAGACTTATTTGGACGAGTAGGACTCCTAGAAGATGCAAAGAGGACCATTGATCAAATGCCTATTATGCCTGATGCTCAAATATGGCAGATTCTTCTCTCAGGCTGCAACATCCATGGAAATGTTGATTTGGGGGAAGTTGCAGCAAAGAAGCTTATCGAGCTGCAACCTGAAAATGATTCCGCTTATGTTCTTCTCTCAAATCTCTATGCTTCAGCTGGTAGGTGGAATGCTGTTGGAAAATTGAGAAGGGTAATGAAAAAAAAAATAATCTGCAAGGAACCTGGTTCTAGTTGGATTCAGGTGAGAGGATCTGTGCATTACTTTTTTGCTAGCGATACATCACATCCTGAGAGTAAAGAAATTTATATGAAGCTCCAGAGGTTGTATGAGGAAATGTTTGCTTCACCATATTTGGAACAAGATAGACCTGTAAACTATGATCCAATTCAATTTTGA 2445 0.4249 MKGLATHSDALQSIKTLVLKRLYPQALRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLEQNEVAHGVCLKMGLLNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGLELNEFSLTSVLGALSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERIGAAYDAIEAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYASAGRWNAVGKLRRVMKKKIICKEPGSSWIQVRGSVHYFFASDTSHPESKEIYMKLQRLYEEMFASPYLEQDRPVNYDPIQF* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0034 814 SUPERFAMILY TPR-like 484 739 IPR011990 GO:0005515
Vvi2g0034 814 Pfam PPR repeat family 382 425 IPR002885 -
Vvi2g0034 814 Pfam PPR repeat family 84 131 IPR002885 -
Vvi2g0034 814 Pfam PPR repeat family 584 632 IPR002885 -
Vvi2g0034 814 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 537 646 - -
Vvi2g0034 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 232 804 IPR046960 GO:0003723|GO:0009451
Vvi2g0034 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vvi2g0034 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Vvi2g0034 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Vvi2g0034 814 Gene3D Tetratricopeptide repeat domain 539 638 IPR011990 GO:0005515
Vvi2g0034 814 Pfam E+ motif 768 795 IPR046849 -
Vvi2g0034 814 Pfam E motif 701 763 IPR046848 -
Vvi2g0034 814 Gene3D Tetratricopeptide repeat domain 436 538 IPR011990 GO:0005515
Vvi2g0034 814 Gene3D Tetratricopeptide repeat domain 644 798 IPR011990 GO:0005515
Vvi2g0034 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Vvi2g0034 814 FunFam Pentatricopeptide repeat-containing protein At2g04860 440 536 - -
Vvi2g0034 814 Gene3D Tetratricopeptide repeat domain 149 249 IPR011990 GO:0005515
Vvi2g0034 814 Gene3D Tetratricopeptide repeat domain 26 148 IPR011990 GO:0005515
Vvi2g0034 814 Gene3D Tetratricopeptide repeat domain 292 435 IPR011990 GO:0005515
Vvi2g0034 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 654 IPR002885 -
Vvi2g0034 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vvi2g0034 814 FunFam Pentatricopeptide repeat-containing protein chloroplastic 647 784 - -
Vvi2g0034 814 NCBIfam pentatricopeptide repeat 184 213 IPR002885 -
Vvi2g0034 814 NCBIfam pentatricopeptide repeat 87 121 IPR002885 -
Vvi2g0034 814 NCBIfam pentatricopeptide repeat 586 620 IPR002885 -
Vvi2g0034 814 NCBIfam pentatricopeptide repeat 384 412 IPR002885 -
Vvi2g0034 814 NCBIfam pentatricopeptide repeat 621 654 IPR002885 -
Vvi2g0034 814 FunFam Uncharacterized protein 292 435 - -
Vvi2g0034 814 Pfam PPR repeat 356 379 IPR002885 -
Vvi2g0034 814 Pfam PPR repeat 558 578 IPR002885 -
Vvi2g0034 814 Pfam PPR repeat 258 282 IPR002885 -
Vvi2g0034 814 Pfam PPR repeat 156 177 IPR002885 -
Vvi2g0034 814 Pfam PPR repeat 184 214 IPR002885 -
Vvi2g0034 814 Pfam PPR repeat 659 682 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0034 Vvi-Chr2 349466 351910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0034 112 801 Glycoside Hydrolase AT3G49170 33.008 5.12e-121 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0034 - - vvi:104881090 1637.85