Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0030 ATGGCCACATTTTATCTTACACTTAATCCAGCCTCGTTTCTTGCAGTTTCTAGCCAGAAAAGGTTGAGTTCAAACTCCATCCAATGCTGCCAGGACACCAATGGACAGCCAAGACCTAGAGTGACCCATGAACCTTCAGATAACTGGTTGACCAGTTTCCCAGAAAAGAATCCTATTATTAGTTCACCTACTGTCCTGCCTCCACGGCCTCGCCGGATAATTCTGGTTCGACATGGACAGAGTGAAGGAAATGTTGATGAAAGTGTCTATACACAGGTCCCTGATCCAAAGATTAAACTCACAGAAAAAGGAATGGCTCAAGCTGAGGAATGTGGAAAGAATATAAGGAAGATGATAGAGAAAGATGGTGTGGATGATTGGAAAGTTTACTTCTATGTGTCACCATATAGGAGAACACTAGAAACATTGAGGTGTTTGGCTCGAGCATTTAAACGCCGAAGGATTGCTGGCTGGAGAGAAGAGCCTCGTCTACGAGAGCAAGATTTTGGGAATTTTCAAGACAGAGAAAAGATGCGGATAGAAAAAGCTACTCGTGTTCTCTATGGCCGCTTCTTTTACCGATTTCCTAATGGGGAATCTGCAGCCGATGTTTATGATAGAATAACAGGATTTAGAGAAACCCTGAGAGCAGATATTGACATTGGCCGCTTTCAGCCACCTGGGGAAAGGAACCCAAACATGAACTTAGTAATTGTGTCACATGGTCTTACATTGCGGGTGTTCCTGATGAGGTGGTACAAATGGACCGTGGAGCAATTTGAGGGACTTAATAACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAGGTACAGCTTATTAATGCACCACACTGAAGAAGAGCTGAGAAACTTTGGACTAACAGAAGAAATGCTGATCGATCAGGAATGGCAAAAGATTGCCAAACCAGGTGAACTGAATTACGATTGCTTGATTACTGGACCATCTTTCTTCACCCACTTTGAGGATGAGGACAACGAAACCTAG 1020 0.4353 MATFYLTLNPASFLAVSSQKRLSSNSIQCCQDTNGQPRPRVTHEPSDNWLTSFPEKNPIISSPTVLPPRPRRIILVRHGQSEGNVDESVYTQVPDPKIKLTEKGMAQAEECGKNIRKMIEKDGVDDWKVYFYVSPYRRTLETLRCLARAFKRRRIAGWREEPRLREQDFGNFQDREKMRIEKATRVLYGRFFYRFPNGESAADVYDRITGFRETLRADIDIGRFQPPGERNPNMNLVIVSHGLTLRVFLMRWYKWTVEQFEGLNNLGNGDMIVMEKGYGGRYSLLMHHTEEELRNFGLTEEMLIDQEWQKIAKPGELNYDCLITGPSFFTHFEDEDNET* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0030 339 SUPERFAMILY Phosphoglycerate mutase-like 70 281 IPR029033 -
Vvi2g0030 339 Gene3D - 69 306 IPR029033 -
Vvi2g0030 339 CDD HP_PGM_like 72 275 IPR013078 -
Vvi2g0030 339 PANTHER BROAD-RANGE ACID PHOSPHATASE DET1 69 337 - -
Vvi2g0030 339 SMART PGAM_5 72 248 IPR013078 -
Vvi2g0030 339 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 75 84 IPR001345 GO:0003824
Vvi2g0030 339 Pfam Histidine phosphatase superfamily (branch 1) 73 275 IPR013078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0030 Vvi-Chr2 317317 320922 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0030 - - vvi:100258700 692.189