Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0023 ATGGGCCATGGTGAAAAGGGCCGACCCAGCAAAAGGCACAAATCATCTTCCAAGGATGAGCACAAGAACCCGGTTGTTGAAGATGAAGATGCGTATTATGGTGAAGAGTTCGAAGATGATTATCGAGATGGCGAGAAAGAAGGGAAGAAGAGAGATTTCACCAAGTTAGAGCTGAAGGTCGATCATTCCAATAGACCATTATGGGCCTGCGCTGATGGCCGAATCTTTCTTGAAACTTTCTCGCCTTTGTACAAACAAGCCTATGATTTTCTTATTGCCATAGCCGAACCAGTTTGCAGGCCTGAGTCCATGCACGAATACAATTTGACCCCACACTCATTGTATGCGGCAGTGTCGGTTGGTCTTGAAACAGAAACAATTATAGCTGTTTTGAGTAAATTGTCAAAGACCAAACTCCCCAAGGAGATGATTGATTTTATACATGCTTCCACTGCTAATTACGGCAAAGTAAAGCTCGTGCTTAAAAAAAATCGATACTTTGTCGAGTCCCCATTCCCAGAGGTGTTGAAGACATTGCTTCGGGATGAAGTCATATCTCGTTCTAGGATTTCTCACGAGGGTTCAACTGGAAATGATGGATTTACAATCAGCAAAACAGTTGGTGAAATCGAAGGTCGCCATGATGAGTTAATAAATGAAGCAGAATTGGCAGCTGCAGCTGAAGAAAAAGAAACCCATTCTTTTGAGGTTGACCCTGCTCAGGTTGAAAATGTGAAGCAACGGTGCTTGCCCAATGCTTTAAATTATCCCATGTTGGAGGAGTATGACTTCAGGAACGATACTGTCAACCCTGATCTTGATATGGAACTGAAGCCACAAGCACAGCCACGTCCTTATCAGGAAAAGAGTCTTAGTAAAATGTTTGGGAATGGTAGAGCAAGATCTGGTATTATTGTACTACCATGTGGTGCAGGAAAGTCCTTAGTTGGTGTTTCTGCAGCCTGCCGAATACGTAAGAGCTGCCTTTGTTTAGCAACAAATGCTGTTTCTGTGGATCAGTGGGCCTTTCAGTTCAAGCTGTGGTCTACCATACGAGATGAACAGATATGTCGGTTCACATCTGATAGTAAGGAAAGGTTCCGGGGTAATGCTGGGGTGGTTGTGACAACATATAACATGGTTGCTTTTGGTGGCAAGCGGTCTGAAGAATCTGAGAAGATTATTGAAGAAATAAGAAATAGAGAATGGGGATTGCTTCTCATGGATGAGGTGCATGTAGTTCCTGCTCACATGTTTCGGAAGGTCATCAGCATCACTAAATCTCACTGCAAACTTGGGCTTACTGCTACACTTGTCAGAGAGGATGAGAGGATTACAGATTTGAACTTCCTTATTGGTCCCAAGCTCTATGAAGCAAACTGGTTGGATTTAGTTAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTATGGTGTCCAATGACAAAGGAGTTTTTTGCTGAATATTTAAAGAAAGAAAATTCCAAGAAAAAGCAGGCACTTTATGTGATGAACCCTAATAAGTTTAGGGCTTGTGAGTTTTTAATACGGTTCCATGAGCAGCAGCGTGGTGACAAGATAATTGTTTTTGCTGACAATCTTTTTGCACTCACAGAGTATGCAATGAAGCTTCGGAAACCTATGATCTATGGTGCCACCAGCCACGTTGAAAGAACAAAAATTCTTGAGGCTTTCAAAACTCACAAGGATGTGAACACTATTTTTCTTTCAAAGGTGGGAGATAATTCAATTGATATTCCTGAAGCAAATGTGATTATTCAAATTTCTTCCCATGCTGGTTCAAGACGTCAAGAAGCCCAGCGATTGGGTCGTATTCTTAGGGCAAAGGGTCGACTTCAGGATAGGTTGGCTGGAGGTAAAGAGGAGTACAATGCATTTTTCTATTCCCTCGTATCTACAGATACACAGGAGATGTACTACTCAACAAAAAGGCAGCAGTTCTTGATTGATCAAGGTTATAGCTTTAAGATAATAACAAGCTTGCCTCCGCCTGATTCTGGCGCCGATCTGAGCTACCACCGCCTGGATGAGCAACTGGCACTTCTTGGAAAGGTATTAAGTGCAGGTGATGATGCAGTTGGTCTAGAGCAATTAGATGAAGATGCAGATGACATAGCACTCCAAAAAGCTCGTCGATCTGTGGGATCCATGAGTGCCATGTCTGGTGCTAGTGGGATGGTTTACATGGAATACAATACTGGACGCAACAAACATGGTGGGCAGGGCCAGATCAAGGGTAAGCCCAAGGATCCATCCAAGAGACATCATTTATTCAAGAGACGCTTTGGCTGA 2316 0.4296 MGHGEKGRPSKRHKSSSKDEHKNPVVEDEDAYYGEEFEDDYRDGEKEGKKRDFTKLELKVDHSNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLRDEVISRSRISHEGSTGNDGFTISKTVGEIEGRHDELINEAELAAAAEEKETHSFEVDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILEAFKTHKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGRLQDRLAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKIITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALQKARRSVGSMSAMSGASGMVYMEYNTGRNKHGGQGQIKGKPKDPSKRHHLFKRRFG* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0023 771 CDD SF2_C_XPB 475 639 - -
Vvi2g0023 771 NCBIfam DNA repair helicase rad25 52 768 IPR001161 GO:0003678|GO:0006289|GO:0006367
Vvi2g0023 771 Pfam ERCC3/RAD25/XPB C-terminal helicase 464 712 IPR032438 -
Vvi2g0023 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 456 IPR014001 -
Vvi2g0023 771 SMART helicmild6 539 617 IPR001650 -
Vvi2g0023 771 MobiDBLite consensus disorder prediction 757 771 - -
Vvi2g0023 771 Pfam Helicase conserved C-terminal domain 67 190 IPR032830 -
Vvi2g0023 771 Gene3D - 273 464 IPR027417 -
Vvi2g0023 771 FunFam Probable DNA repair helicase RAD25 273 464 - -
Vvi2g0023 771 PANTHER RAD25/XP-B DNA REPAIR HELICASE 56 739 - -
Vvi2g0023 771 Gene3D - 465 705 IPR027417 -
Vvi2g0023 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 458 IPR027417 -
Vvi2g0023 771 MobiDBLite consensus disorder prediction 1 46 - -
Vvi2g0023 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 712 IPR027417 -
Vvi2g0023 771 MobiDBLite consensus disorder prediction 12 29 - -
Vvi2g0023 771 SMART ultradead3 279 460 IPR014001 -
Vvi2g0023 771 CDD DEXHc_XPB 275 444 - -
Vvi2g0023 771 MobiDBLite consensus disorder prediction 744 771 - -
Vvi2g0023 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 677 IPR001650 -
Vvi2g0023 771 Pfam Type III restriction enzyme, res subunit 282 438 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vvi2g0023 771 FunFam Putative DNA repair helicase rad25 465 707 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 151 170 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 573 591 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 295 317 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 592 617 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 264 290 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 65 85 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 526 548 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 720 739 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 468 490 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 506 521 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 402 422 - -
Vvi2g0023 771 PRINTS Xeroderma pigmentosum group B protein signature 629 652 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0023 K10843 - vvi:100250174 1512.28