Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0022 ATGAGCGGCCACGATTCCAAGTACTTCTCCACCACCAAGAAGGGAGAAATCCCCGAGCTCAAAGAGGAGCTCAATTCTCAGTACAAGGATAAGAGAAAAGATGCTGTGAAAAAGGTGATTGCTGCAATGACTGTTGGGAAGGATGTCTCATCGTTGTTCACAGATGTTGTGAATTGCATGCAAACAGAGAATTTGGAGCTCAAAAAGCTTGTTTATTTGTATCTCATAAATTATGCTAAAAGCCAGCCGGACCTAGCAATACTTGCAGTAAATACATTTGTGAAGGATTCACAGGATCCAAACCCTTTAATTCGTGCTTTGGCAGTACGAACAATGGGATGCATTCGTGTTGATAAAATCACAGAATATCTATGTGACCCCCTTCAGAGGTGTCTCAAGGATGATGACCCATATGTTCGCAAGACGGCATCTATATGTGTTGCTAAACTTTACGACATAAATGCTGAGTTAGTCGAGGATAGGGGTTTTCTGGAATCTCTCAAGGATTTGATCTCTGACAATAATCCGATGGTTGTAGCAAATGCTGTGGCAGCTCTTTCTGAGATTCAAGAGAACAGTAGCAGGCCTATCTTTGAGGTCACCAGCCACACTCTTTCAAAGCTCCTTACTGCTCTAAATGAATGCACAGAGTGGGGTCAAGTTTTCATATTGGATGCACTTTCCAAGTACAAGGCAGCTGATGCTCGTGAAGCTGAAAGTATAGTAGAGCGAGTTACTCCACGATTACAACATGCAAATTGTGCAGTTGTACTTTCAGCTGTTAAGATGATCCTCCAACAAATGGAACTCATCACCAGTACTGATGTTGTCAGAAATCTTTGCAAAAAAATGGCTCCTCCTCTTGTAACATTGCTCTCTGCAGAACCTGAGATACAATATGTTGCATTGAGGAACATCAACCTTATTGTACAAAGACGGCCTACAATCCTTGCCCATGAAATCAAGGTATTCTTCTGCAAGTACAATGATCCAATTTATGTGAAGATGGAAAAATTAGAAATCATGATAAAGCTTGCTTCAGACCGAAATATAGACCAGGTTCTATTGGAGTTCAAAGAGTATGCTACAGAAGTAGATGTAGATTTTGTCAGAAAGGCTGTTCGTGCTATTGGCCGTTGTGCCATAAAGTTAGAGAGAGCAGCAGAGCGATGCATTAGTGTTTTACTTGAGCTGATCAAGATTAAAGTAAACTATGTGGTTCAAGAGGCTATTATAGTTATCAAAGATATTTTTAGGAGATACCCTAATACCTATGAATCCATCATTGCAACACTCTGTGAGAGCTTAGACACTTTGGATGAGCCAGAAGCAAAGGCATCAATGATCTGGATAATTGGTGAATATGCAGAAAGAATTGACAATGCTGATGAGCTCCTTGAAAGCTTCTTGGAGAGTTTTCCTGAGGAGCCTGCACAAGTTCAATTGCAGTTGTTAACAGCAACTGTCAAACTTTTCCTTAAGAAGCCAACTGAAGGGCCACAGCAGATGATTCAGGTAGTTTTGAATAATGCCACTGTAGAGACAGACAATCCAGATCTCCGGGATCGTGCATACATTTATTGGCGTCTTCTTTCAACTGATCCTGAGGCTGCTAAGGATGTTGTATTAGCTGAGAAGCCTGTGATTAGTGATGATTCGAACCAACTTGATCCTTCTCTCCTCGATGAGCTTCTTGCCAACATTGCTACTTTGTCATCAGTGTATCACAAACCTCCAGATTCATTTGTGACTCGTGTGAAGACTACACCACAAAGATCTGAAGAGGACGACTATCCAGATGGGAGTGAAGCAGGGTACTCTGAGTCATCTGCTCATGCACCTGACAGTGGTGCATCACCTCCAACCAGCTCTAGTAGCGTTCCATATGCTTCACCCAAACATCCAGCCACTACACAGGTTTCACCTCCACCAGCTGCTCCTGCCCCAGATTTACTGGGCGATCTAATTGGGTTGGATAATGCTATTGTACCTGTTGATCAGCCTGTTGAACCTGCTGGCCCTCCTTTGCCCGTTCTACTACCAGCATCAACTGGTCAAGGTTTACAAATTAGTGCCCATCTGGCACGAAAGGATGGTCAAATATTTTACAGTATGTTATTTGAAAACAACTCACAGATCCCTCTTGATGGGTTCATGATTCAGTTCAATAAGAATTCATTTGGGCTTGCTCCAGCTGGACCTCTGCAGGTCCCTCAATTGCAACCGGGGACATCAGCAAGGACTCTTCTGCCTATGGTTTTGTTCCAGAATATGGCTCCTGGTCCTCCAAACTCACTTCTGCAGGTTGCTGTGAAGAATAACCAACAACCAGTGTGGTACTTCAGTGATAAAATCTCATTGCTGGTTTTCTTCTCTGAGGATGGGAAAATGGAGCGTGCAAGCTTTCTCGAGGCATGGAAGTCCCTTCCTGATTCAAATGAGGTGTCAAAGGAGTTTCCTGGCATCACGGTGAACAGTCTGGAAGGCATCCTAGACCGGTTAGCTGCGTCAAAAGTGTTCTTCATTGCAAAGCGGAAGCATGCAAACCAGGAGGTGCTGTATCTCTCTGCCCAGGTCCCTGGAGGAATCACATTCTTGATTGAACTCACTATGGTTGCTGGGGCCCCCGGGGTGAAGTGTGCAATCAAGACCCCAAGCCCTGAAATGGCTCCTCTCTTCTTTGAAGCCATTGAGACCCTCCTCAGAGGTTGA 2712 0.4388 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTASICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALSEIQENSSRPIFEVTSHTLSKLLTALNECTEWGQVFILDALSKYKAADAREAESIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPDSFVTRVKTTPQRSEEDDYPDGSEAGYSESSAHAPDSGASPPTSSSSVPYASPKHPATTQVSPPPAAPAPDLLGDLIGLDNAIVPVDQPVEPAGPPLPVLLPASTGQGLQISAHLARKDGQIFYSMLFENNSQIPLDGFMIQFNKNSFGLAPAGPLQVPQLQPGTSARTLLPMVLFQNMAPGPPNSLLQVAVKNNQQPVWYFSDKISLLVFFSEDGKMERASFLEAWKSLPDSNEVSKEFPGITVNSLEGILDRLAASKVFFIAKRKHANQEVLYLSAQVPGGITFLIELTMVAGAPGVKCAIKTPSPEMAPLFFEAIETLLRG* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0022 903 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 3 856 IPR026739 GO:0016192
Vvi2g0022 903 Gene3D - 787 903 IPR012295 -
Vvi2g0022 903 Pfam Adaptin N terminal region 15 533 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi2g0022 903 Pfam Beta2-adaptin appendage, C-terminal sub-domain 792 901 IPR015151 GO:0006886|GO:0016192|GO:0030131
Vvi2g0022 903 SMART alpha_adaptinc2 672 782 IPR008152 GO:0006886|GO:0016192
Vvi2g0022 903 MobiDBLite consensus disorder prediction 612 636 - -
Vvi2g0022 903 SUPERFAMILY ARM repeat 8 582 IPR016024 -
Vvi2g0022 903 Gene3D - 4 592 IPR011989 -
Vvi2g0022 903 Pfam Adaptin C-terminal domain 686 781 IPR008152 GO:0006886|GO:0016192
Vvi2g0022 903 PIRSF Beta_adaptin 1 733 IPR016342 GO:0015031|GO:0030276
Vvi2g0022 903 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 790 902 IPR009028 GO:0006886|GO:0016192|GO:0030117
Vvi2g0022 903 FunFam Beta-adaptin-like protein 787 902 - -
Vvi2g0022 903 Gene3D - 673 785 IPR013037 GO:0006886|GO:0016192
Vvi2g0022 903 SMART B2_adapt_app_C_2 791 902 IPR015151 GO:0006886|GO:0016192|GO:0030131
Vvi2g0022 903 FunFam Beta-adaptin-like protein C 675 785 - -
Vvi2g0022 903 MobiDBLite consensus disorder prediction 580 652 - -
Vvi2g0022 903 FunFam AP complex subunit beta 3 592 - -
Vvi2g0022 903 SUPERFAMILY Clathrin adaptor appendage domain 673 788 IPR013041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0022 Vvi-Chr2 254701 263588 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0022 K12392 - vvi:100241708 1709.12