Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0020 ATGCTGGAGCCAGAGCTTTGTTCTGCTCGCGTTCTATCGCCTTTTCGCGAGGAAAGTGGTGATGAAGAGCTCTCTGTTCTACCTAGGCACACCAAGGTCATTGTTACTGGTAACAACAGAACAAAGTCTGTTTTGGTGGGCTTGCAAGGTGTTGTGAAGAAGGCTGTGGGCCTCGGTGGTTGGCATTGGCTGGTTTTGAAGAATGGGGTTGAAGTTAAGTTGCAAAGGAACGCTCTGAGCGTGCTGGAACCCCCGACCGGGAATGAAGAAGATGATGATCATGACTTTGATAACTCTAGCAGTAGTTCCGACATTGGTGAGAAGGACAACGATTTCTCCAGCAGCATTGAGTTCCACAAATTGAGCAAGCCAAGAGCCCGACATACAAGGCCCTGGGCACCATCTGCATCAGTGAAATTGACCAACCGCAATAGCCACCGCGAAGTCCAATCTGGCATTGATGCTCCTCAACCAATTGTGAACTTGGCAAAACTAGGAACTGATTCATTGTGGAGATATTGCAAAAAATTCAACATTGGGAATCTTAACTCTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAGCAGCACTTCACAGCACAGCAAGTGGAGGAGGTACCTGTGATCATGGGGTTCATCCGCGCAGCCAAGAGACTGAAGACAAGTGGAGGAAGTAGCCGTGATCATGGAGTTCATCCGCACAGCCAAGAGACTGAAGACAGCTAA 729 0.4856 MLEPELCSARVLSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEPPTGNEEDDDHDFDNSSSSSDIGEKDNDFSSSIEFHKLSKPRARHTRPWAPSASVKLTNRNSHREVQSGIDAPQPIVNLAKLGTDSLWRYCKKFNIGNLNSNSSREQMLKAVQQHFTAQQVEEVPVIMGFIRAAKRLKTSGGSSRDHGVHPHSQETEDS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0020 242 MobiDBLite consensus disorder prediction 221 242 - -
Vvi2g0020 242 PANTHER SAP30 17 235 IPR024145 -
Vvi2g0020 242 Gene3D - 138 233 IPR038291 -
Vvi2g0020 242 MobiDBLite consensus disorder prediction 82 110 - -
Vvi2g0020 242 MobiDBLite consensus disorder prediction 222 242 - -
Vvi2g0020 242 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 165 218 IPR025718 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0020 Vvi-Chr2 244210 246222 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0020 - - vvi:100258615 469.929