Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0019 ATGTCATCCCCAAGCAAACGCAGAGAGATGGATTTGATGAAACTGATGATGAGTGATTATAAGGTGGAGATGGTGAATGATGGCATGCAAGAGTTCTATGTCGATTTCCATGGACCCGGTGACAGTCCTTACCATGGAGGTGTGTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCAACCCATCAGATCCATTGAATGGAGAGGCTGCAGCCCTGATGATGCGAGATCGGCCTGCTTATGAACAAAGAGTGAAAGGTAAGATGTCCATCCAATATTGTCCCTGTTCGGTCAAGCCATGA 465 0.4387 MSSPSKRREMDLMKLMMSDYKVEMVNDGMQEFYVDFHGPGDSPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKGKMSIQYCPCSVKP* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0019 154 FunFam Ubiquitin-conjugating enzyme 5, E2 1 151 - -
Vvi2g0019 154 SUPERFAMILY UBC-like 4 141 IPR016135 -
Vvi2g0019 154 SMART ubc_7 4 149 - -
Vvi2g0019 154 Pfam Ubiquitin-conjugating enzyme 10 140 IPR000608 -
Vvi2g0019 154 CDD UBCc 7 140 IPR000608 -
Vvi2g0019 154 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Vvi2g0019 154 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Vvi2g0019 154 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Vvi2g0019 154 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0019 Vvi-Chr2 236566 239329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0019 3 115 Miscellaneous Gene Families AT3G17000 24.793 1.73e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0019 K10576 - vvi:100253472 298.516