Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0012 ATGGGAGCAGAGCAGAGAGAAACCCAGGCGATAGAGCAGTTCGTGAAGCGAGCGTCGGACCTCGAGGGTTCCTCTCTCGTCGACTTCATCATCCAAGCCACCTCCCATTCCTCACTCTTCGCCTTCTCTGAGATTTTGGCTGTCCCCAGCGTTGTCGAGCTTCATGGAACTCAATATTCTGTATACATTGATTTGCTCCGTCTCTTTGCTCATGGTACATGGAGGGATTACAAGAGTAATGCTGGCTTTCTTCCAGAGCTGGTTCCAGATCAAGTTCTCAAGCTAAAGCAACTTAGTATCCTTACTCTTGCTGAGAAGAACAAAGTTCTCTCCTACTATCAACTGATGCAGGAACTTGATATTTCTAATGTACGTGAACTTGAAGATTTTCTTATCAATGAGTGCATCAATGCGGGCATTGTTAGAGGAAAGTTGAATCAGTTGCAAAAATGCTTTGAGGTGCAATTTGCAGCAGGAAGAGATCTGAGACCTGGAACACTTGTGAGTCTGATACAGACTCTTACAAATTGGTTGTCCACTTCAGACAAAATGCTGTTGACAATCAAAGAGATGATTGATCAGGCAGATAGGATGAAAGAGTTGGACATGGAACATCAAAAGGAAGTTGAAGAAAAGATAGAATTAGCGAAGAAATTCCTCCAGAACAAGCCTAGTATCAAGTTGGGGCCATTGGAGGACATTGACATGCTCTATATGGATGAAGTAATGAGCTCCAGGGAACTTGGAACCCACTCCAAGAGGAAGCGAACATCAATATAG 780 0.4385 MGAEQRETQAIEQFVKRASDLEGSSLVDFIIQATSHSSLFAFSEILAVPSVVELHGTQYSVYIDLLRLFAHGTWRDYKSNAGFLPELVPDQVLKLKQLSILTLAEKNKVLSYYQLMQELDISNVRELEDFLINECINAGIVRGKLNQLQKCFEVQFAAGRDLRPGTLVSLIQTLTNWLSTSDKMLLTIKEMIDQADRMKELDMEHQKEVEEKIELAKKFLQNKPSIKLGPLEDIDMLYMDEVMSSRELGTHSKRKRTSI* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0012 259 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 86 177 IPR000717 -
Vvi2g0012 259 ProSiteProfiles PCI domain profile. 1 159 IPR000717 -
Vvi2g0012 259 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 10 218 IPR045237 -
Vvi2g0012 259 Pfam PCI domain 82 154 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0012 Vvi-Chr2 142428 175818 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0012 K12180 - vvi:100241435 494.967