Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0009 ATGGCTAGGGTACCCGCATTGACCACAAGCATTCAGTATACTCAGCACTACCTCTTGGAAAAGCTTGTTGTTAAAGGTGTAGTAGTGCTGATGGGGTTTTGTTCTCTCTCAACCTTGGCCATGGCTGATAGGCATGGTGAGGATTCTCCATACTTTGCTGGTTGGAAAGCCTATGATCTCAACCCATATGACCTACTCTACAACCCATCTGGGATTATTCAAATGGGTCTTGCTGAGAATCAGGTTGGGACTGACCTATTAGAAGAGTGGCTGGAGAAGCATTCTGATATCCCTACATGGAAGGGCACTCTCACAAGCTTCAAGCAAACTGCACTGTATCAGGATTACCATGGCCTAGCTAATTTTAGAAAGGCACTAGCTAACTTCATGGCAGAAGTGAGGGGAAGGAGAGTGAAGATTGATCCAGATATGATTGTTTTAACAGCCGGTGCCACCGCCGGCAATGAAATACTCACATTTTGCATTGCTGACCCCGGAGAGGCCTTGCTTGTCCCAACCCCATACTATCCAGGGTTTGATAGGGATTTGAGGTGGAGAACTGGGGTGGATATAATACCAGTGAAGTGCTATAGCTACAACAACTTTGAAGTCACACTCCCAGCCTTAGAAAAAGCCTACCAAGAAGGGTTAAGCAAGAAGCAGTCCATAAAAGCTATTCTCATAACCAACCCATCAAACCCTCTAGGCCTCACCATTTCCCCTCAAACCCTCACCATGATACTCGACTTCGCTGCTGAAAAATCTATCCATGTCATTTCTGATGAAGTTTACGCTGGAACTGTGTTTTCTTCTCAGCCCTTCACTAGCATACTTGAAATTGTCCAGAGCTCAAACAAGTATGACCCGGAAACAGTCCATGTCGTTTATAGCCTCTCCAAGGATCTTGGCCTCCCGGGCTTCCGAATTGGCGCTATCTACTCCTCAAACCCCAGAATTATCACTGCATCAAGGAGAATGTCAAGCTTCTCTCTCATATCCTCCCAAACCCAGGTGCTGCTAAAGTGCCTTCTTTCCGACTCTGGATTTATCGCAGAGTATCTTGCTACAATTAAGGAGAGACTGAAAAGGCGACACGGGGAATTCAAGAGGGGGTTGAAAGAGATAGGAATCGATTCCTTGGAAGGTAATGCAGGTCTATTCAGCTGGGTTAACTTGAGGAATTTATTGGTTTGTGATAATTGGGATGGAGAAATGAAGCTATGGAGAGTAATTCTTGAAGAAATCGGCTTGAACGTGAGCCCAGGATGCTCATTCCACTGCGAAGAACCGGGATGGTTTAGGGTTTGTTATGGGAATATGAGCGAAGATGAGATGAATGTTGCTCTAGGCAGGATAAAGGCATTCATGTCGGCTGGTCGAGCACAAGAAATAGCAGTACTATCCATGGGGAAAACTGATGCATTGGCGGCAGCGGAGGGGTCCAGTGGGGTTGCGGCCGCAGCCTGCACATCACTTGGGTTGGATGCAGGTGATCTACAACCAGAGCCACTTGCTCACTGA 1521 0.4675 MARVPALTTSIQYTQHYLLEKLVVKGVVVLMGFCSLSTLAMADRHGEDSPYFAGWKAYDLNPYDLLYNPSGIIQMGLAENQVGTDLLEEWLEKHSDIPTWKGTLTSFKQTALYQDYHGLANFRKALANFMAEVRGRRVKIDPDMIVLTAGATAGNEILTFCIADPGEALLVPTPYYPGFDRDLRWRTGVDIIPVKCYSYNNFEVTLPALEKAYQEGLSKKQSIKAILITNPSNPLGLTISPQTLTMILDFAAEKSIHVISDEVYAGTVFSSQPFTSILEIVQSSNKYDPETVHVVYSLSKDLGLPGFRIGAIYSSNPRIITASRRMSSFSLISSQTQVLLKCLLSDSGFIAEYLATIKERLKRRHGEFKRGLKEIGIDSLEGNAGLFSWVNLRNLLVCDNWDGEMKLWRVILEEIGLNVSPGCSFHCEEPGWFRVCYGNMSEDEMNVALGRIKAFMSAGRAQEIAVLSMGKTDALAAAEGSSGVAAAACTSLGLDAGDLQPEPLAH* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0009 506 Gene3D Aspartate Aminotransferase, domain 1 61 451 IPR015422 GO:0003824
Vvi2g0009 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 75 101 - -
Vvi2g0009 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 166 187 - -
Vvi2g0009 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 291 315 - -
Vvi2g0009 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 323 346 - -
Vvi2g0009 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 220 244 - -
Vvi2g0009 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 107 123 - -
Vvi2g0009 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 164 - -
Vvi2g0009 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 256 279 - -
Vvi2g0009 506 Pfam Aminotransferase class I and II 73 452 IPR004839 GO:0009058|GO:0030170
Vvi2g0009 506 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 36 454 - -
Vvi2g0009 506 SUPERFAMILY PLP-dependent transferases 41 456 IPR015424 -
Vvi2g0009 506 CDD AAT_like 113 454 - -
Vvi2g0009 506 Gene3D - 95 346 IPR015421 GO:0003824
Vvi2g0009 506 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 297 310 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0009 Vvi-Chr2 117104 118883 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0009 K01762 - vvi:100251690 926.006