Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1628 ATGCGTCGGCCTCATACTTGTTTCTCAGAGAAGCCGCAGCAGCACCTCATTCTCCCTCATCGGCGGTTACTGTTAGTGCGGCCCCCGCTGCTTCTTGTGCTGCTTCTCCTCTTGACGCTCACGGTTTCATCATGGTTAGCTGTCTTTCTGTGTGGTTTCTCAAAACCGCGGCAGCAGCAAGTTCCATCCCTTGAATTTAACGAGAGTTTGAATAATAACAATGCCCATCATTCTTCTGCAGAATCTGTCCAGGACCGGAATGATTCCCTCAGCTCAGGGAACCTCTTAGGTTCTCCTTACCACAATTGGCAACTTTTTGCCTCTGATTTTCAGGAAATGCTGCACAAATTAAAGATCTTCGTCTATCCTGATGCATCCATGAACCAGTCATCTTCTCCCTTCGCTCGGGTTTTCCTTCCCAACCCAAACCCTTTCCATCCCAAACTAGCAAATTACTTCAGTGAGCACATGTTTAAGGTGGCTCTTCTCCGTAGTTCCCTCCTTACGCCCCATCCACAAGATGCTCATTTCTTTTTCTTGCCCTTTTCCGTCAATACTCTGCGTAATGATCCTCGCGTGCATTCCGAGGCATCCATTTCCGATTTTGTCACCCAATACACCACTAGAATCAGTTGGGAGTACAAATTTTGGAATGCCTCTAGAGGCACTGACCATTTCTACATCTGCTGTCATTCCGTTGGTCGTGAGGCAGCCTCCAAGCATCATGACTTGCATAACAATGCCATTCAGGTTACTTGCTCCTCCAGCTACTTCCAAAGGCTGTATATTAGCCACAAAGACGTGGGGCTGCCACAGGTTTGGCCTCGGCCTCCTGAGAAACTATTGAATCCCCCAGAATTAAGGCATAAACTTGTTTTTTTTGCTGGCCGTGTGCAAAACTCTCACATCCGCCAGGAGCTAATGGCTGTATGGGGAAATGATACTGATATCGATTTATTCTCTGGAAGTCCACCTTTCCCTTATGAGGAAGGGTTAAGGAAGAGCAAGTACTGTCTCCATGTGAAGGGTTATGAAGTGAACACGGCTAGAGTCTGTGATGCTATACATTATGGGTGCATTCCTGTTATAGTTTCCAACTATTACGATCTTCCTTTCTCAAATGTTTTGGACTGGAGCAAGTTCTCAGTAATCATCAGCCATAAAAGCATTGCCACCTTGAAAAAAATATTGTTATCAATATCAAAACAGAAGTACCTAAGCATGTACCAGAACCTGTGTTTAGTAAGGAGGCACTTCGCATGGCATACAACACCAAGAGGTTATGATTCCTTCCATATGACTGCCTACCAATTGTGGCTTAGGAGAGGTGTACATAGACTATCTTATTAA 1350 0.4533 MRRPHTCFSEKPQQHLILPHRRLLLVRPPLLLVLLLLLTLTVSSWLAVFLCGFSKPRQQQVPSLEFNESLNNNNAHHSSAESVQDRNDSLSSGNLLGSPYHNWQLFASDFQEMLHKLKIFVYPDASMNQSSSPFARVFLPNPNPFHPKLANYFSEHMFKVALLRSSLLTPHPQDAHFFFLPFSVNTLRNDPRVHSEASISDFVTQYTTRISWEYKFWNASRGTDHFYICCHSVGREAASKHHDLHNNAIQVTCSSSYFQRLYISHKDVGLPQVWPRPPEKLLNPPELRHKLVFFAGRVQNSHIRQELMAVWGNDTDIDLFSGSPPFPYEEGLRKSKYCLHVKGYEVNTARVCDAIHYGCIPVIVSNYYDLPFSNVLDWSKFSVIISHKSIATLKKILLSISKQKYLSMYQNLCLVRRHFAWHTTPRGYDSFHMTAYQLWLRRGVHRLSY* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1628 449 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 37 437 IPR004263 GO:0006486|GO:0016757
Vvi1g1628 449 Pfam Exostosin family 115 398 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1628 Vvi-Chr1 22983271 23001188 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1628 - - vvi:100254602 849.736