Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1616 ATGACCACCACTCACTCTTACACTGGCGACCAGAGACTTTTTGATGCAAGCCACCGGGTCCTCAGGCCTGTGCGTGCTGCTGTTCTCAACATAGTCCCAACTTCAACAGGTGCTGCAAAGGCTGTGGCCCTAGTCCTTCCTAATCTCAAAGGAAAGCTCAATGGCATTGCCCTCCGTGTGCCCACATCCAACGTCTCAGTAGTGGACCTTGTTGTCCTGGTTAACGACGGTGAGACTTTTGCAGAGGAGGTGAATGCAGCTTTCAGGAACAGTGCAGAGAAGGAGCTCAATGGTATACCGTCAATGTGCGATGAACCACTTGTATCAGTAGACTTCAGGTGCTCTGATGTATCCTCCACGGTCGACTCATCCCTTACCATGGTTATGGGAGATGACATGGTTAAGGTGGTGGATCTGGCTGACATTGTTGCCAACAACTGTAAGTGA 447 0.5056 MTTTHSYTGDQRLFDASHRVLRPVRAAVLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTSNVSVVDLVVLVNDGETFAEEVNAAFRNSAEKELNGIPSMCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVVDLADIVANNCK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1616 148 Gene3D Dihydrodipicolinate Reductase; domain 2 1 141 - -
Vvi1g1616 148 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 1 137 IPR020829 GO:0016620
Vvi1g1616 148 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1 137 - -
Vvi1g1616 148 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 1 141 IPR020831 GO:0016620
Vvi1g1616 148 FunFam Glyceraldehyde-3-phosphate dehydrogenase 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1616 Vvi-Chr1 22845052 22845498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1616 K05298 - ming:122077761 213.772