Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1613 ATGCTTACTACACTTCCTCAGTCTCTCCCTCTCGGAACAAAAATGGCTTCTTGCCTGTGGCTTCTCTCTCTGGGTTTACTGTTTATGGTCTCTGGAGCAAGGGGTGCTGCTCCAAGGAAGCCTATCGATGTGCCATTCGGTAGAAACTATGTGCCTACATGGGCTTTTGACCACATCAAGTCCTACAATGGAGGCTCTGAGATTCAGCTCGTCCTTGACAAATACACAGGTACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGCAAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGGAACAGGTCCGGCCAACCCTACATTTTACAGACAAATGTCTTCACGGGAGGAAAAGGAGACAGAGAGCAGAGAATCTATCTTTGGTTTGACCCAACCAAAGCTTTTCACTCATACTCAGTTCTATGGAATACGTTTCTGATAATATTCTTGGTGGACGATGTCCCAATAAGAGTGTTCAAGAACAGCAAAGATTTGGGAGTTAAGTTTCCATTCGACCAACCCATGAAGATATACTCAAGCCTGTGGAATGCGGATGACTGGGCCACAAGGGGTGGGCTGGAGAAGACCGACTGGTCCAAGGCTCCATTTGTGGCTTCGTACAAGAGTTTCCACGTGGATGGGTGTGAGGCTTCAGTGGAAGCCAAATTTTGTGCGACCCAGGGCAAGAGATGGTGGGACCAAAGGGAATTTCAAGATCTCGACTCCCTTCAGTACAGGAGACTCGCCTGGGTCCGCCAGAAATACACCATCTACAACTACTGCACTGACCGAGTTAGATACCCCACCATGCCACCTGAATGCAAGAGAGACAGAGACGTTTAG 924 0.4773 MLTTLPQSLPLGTKMASCLWLLSLGLLFMVSGARGAAPRKPIDVPFGRNYVPTWAFDHIKSYNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMQIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRSGQPYILQTNVFTGGKGDREQRIYLWFDPTKAFHSYSVLWNTFLIIFLVDDVPIRVFKNSKDLGVKFPFDQPMKIYSSLWNADDWATRGGLEKTDWSKAPFVASYKSFHVDGCEASVEAKFCATQGKRWWDQREFQDLDSLQYRRLAWVRQKYTIYNYCTDRVRYPTMPPECKRDRDV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1613 307 PIRSF EndGlu_transf 12 306 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vvi1g1613 307 Gene3D - 33 307 - -
Vvi1g1613 307 SUPERFAMILY Concanavalin A-like lectins/glucanases 43 305 IPR013320 -
Vvi1g1613 307 ProSitePatterns Glycosyl hydrolases family 16 active sites. 120 130 IPR008263 GO:0004553|GO:0005975
Vvi1g1613 307 FunFam Xyloglucan endotransglucosylase/hydrolase 35 303 - -
Vvi1g1613 307 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 45 301 IPR044791 GO:0004553
Vvi1g1613 307 Pfam Glycosyl hydrolases family 16 47 227 IPR000757 GO:0004553|GO:0005975
Vvi1g1613 307 CDD GH16_XET 43 301 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vvi1g1613 307 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 37 234 IPR000757 GO:0004553|GO:0005975
Vvi1g1613 307 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 301 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1613 Vvi-Chr1 22826429 22828540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1613 22 307 Glycoside Hydrolase AT5G13870 81.469 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1613 K08235 - vvi:100232906 639.417