Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1612 ATGAGAATCCATGACAACTCCGATACTGAGAACGTCCAAAGTGACAAAGCATCCTACTGTGGCCCTCTGGGCGGACCTCCAGACAAGAAGAGATCCGCAAGAGAGAGTGCCAGATTCAATATTCCACCAGTGACCTCCTCCCAGTTGAAGAGCACCAGTGTTACTCCTCGTGATGATGATGACTACGTGGAGATCACTCTCGGCGTTCTTGATGACTCCATTACAGTTCACAGCGTCCAGGCTCCTGGGGGAGCAAAGGGCGAAGATCCGCAGCTGGCCCAGCTGGCCAAGAAGTCCCTCCAGAAGAAGTCCTCCTATGCTTCCTCCATCTTCTGCACCACCTCCTCTAGAATAAAACCGGTGTCTCAGGAGCTAAAACGCTTCCCTTCCTTCTCAGAGCGGCCTCCTGCTAGACATTTTGATAGGACAAAGTCAGCTGTGACTCACGCCTTGAAGGGACTCAAGTTCATCACCACCAAGGCCAGTGGTGGCGCCACTGGGTGGCCCGTCGTTGAGAAGCGCTTCGATGAACTCACTGCTTCCACTAACGGCCTTCTTCACTTCTCCTTGTTCTGCGAATGCATTGGGATGGACAAGGATTCCAAGGATTTCGCCGATGCGCTGTTCCATGCACTTGCCCGGAGGCATAATTTAACGGGAGATTCAATTGACCAGGCGCAGCTCAAAGCCTTCTGGGAGCAGATCTCCAATCAAGGCTTCGACTCCCGCCTCCAGACTTTCTTTGACATGATGGATAAAAACGCTGATGGTAGAATCACAGAAAAAGAAGTCGGAGAGATTATCAGTCTCAGTGCTGCTGCCAACAAGCTCTCCAATATTCAGAAACAAGCAAATGAGTATGCAGCATTCATCATGGAAGAACTGGACCCAGATAATGTCGGATACATCATGGTTCAGAACCTGGAAACACTGTTGTTGCAAGAACCCAATCAATCTTTTAGCGTAGGAGATAGTCGAATTCTGAGTCAACTCTTAAGCCAGAAGCTCAAGCCCACGCAGGAGAATAACCCATTGAAGAGATGGTGCCACAAGACCAAGTACTTGGTCATGGATAACTGGCAGCGGCTCTGGGTTATGATGTTGTGGCTTGGGATATTGGCAGGCCTCTTCACATACAAGTTTGTTCAGTATCGCCATAAGGCTGCTTACAAGGTGATGGGATACTGTGTCTGTACTGCAAAAGGAGCCGCGGAGACTCTTAAGTTCAACATGGCACTAATTTTACTTCCAGTCTGCCGCAACACTATTACCTGGCTGAGAAACAAGACCAAATTAGGCGTCCTTGTTCCTTTTGACGACAATCTGAATTTCCACAAGGTCATTGCAGTTGCAATTGCCATAGGGGTTGCATTACATGGTGGTGCTCATCTAACATGTGATTTCCCAAAAGTTATTCACGCAACGGAAGAGGAGTACAAGCCCATGGAACCTTACTTTGGCGAGGAGCAGCCTACCAACTACTGGTGGTTTTTGAAAGGAGTGGAAGGGATGACTGGTATTATAATGGTGATCTTGATGGCCATAGCTTTCACACTAGCCACCCCTTGGTTTAGGCGGAATAAGCTGAATCTCCCCGTAACCCTTAAAAAACTCTCCGGGTTCAATGCTTTCTGGTATTCACACCATCTTTTTGTCATCGTCTACGTTCTCCTGATCGTCCATGGCATTTACCTTTATCTTACCAAGGAATGGTATAACAAAACGACATGGATGTACATCGCTGTGCCATTGGTCCTTTATGCATGTGAAAGGTTAATTAGATCTTTTAGATCAACCATCAAGCCTGTTAGGATTCTAAAGGTTGCTGTTTATCCGGGAAATGTGTTGACATTGCACATGACAAAGCCCCAGGGCTTCAAATACAGAAGTGGACAGTACATGTTTGTTAACTGCTCATCGGTTTCCCCCTTCGAATGGCACCCTTTTTCTTTAACTTCAGCACCGGGAGATGACTATCTAAGTGTTCATATTAGAACTCTTGGCGACTGGACACGACAACTTAAAACTGTTTTCCGCGAGGTCTGA 2046 0.4741 MRIHDNSDTENVQSDKASYCGPLGGPPDKKRSARESARFNIPPVTSSQLKSTSVTPRDDDDYVEITLGVLDDSITVHSVQAPGGAKGEDPQLAQLAKKSLQKKSSYASSIFCTTSSRIKPVSQELKRFPSFSERPPARHFDRTKSAVTHALKGLKFITTKASGGATGWPVVEKRFDELTASTNGLLHFSLFCECIGMDKDSKDFADALFHALARRHNLTGDSIDQAQLKAFWEQISNQGFDSRLQTFFDMMDKNADGRITEKEVGEIISLSAAANKLSNIQKQANEYAAFIMEELDPDNVGYIMVQNLETLLLQEPNQSFSVGDSRILSQLLSQKLKPTQENNPLKRWCHKTKYLVMDNWQRLWVMMLWLGILAGLFTYKFVQYRHKAAYKVMGYCVCTAKGAAETLKFNMALILLPVCRNTITWLRNKTKLGVLVPFDDNLNFHKVIAVAIAIGVALHGGAHLTCDFPKVIHATEEEYKPMEPYFGEEQPTNYWWFLKGVEGMTGIIMVILMAIAFTLATPWFRRNKLNLPVTLKKLSGFNAFWYSHHLFVIVYVLLIVHGIYLYLTKEWYNKTTWMYIAVPLVLYACERLIRSFRSTIKPVRILKVAVYPGNVLTLHMTKPQGFKYRSGQYMFVNCSSVSPFEWHPFSLTSAPGDDYLSVHIRTLGDWTRQLKTVFREV* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1612 681 Pfam Respiratory burst NADPH oxidase 140 242 IPR013623 GO:0004601|GO:0050664
Vvi1g1612 681 PRINTS Cytochrome B-245 heavy chain signature 541 561 IPR000778 GO:0016020|GO:0016491
Vvi1g1612 681 PRINTS Cytochrome B-245 heavy chain signature 448 466 IPR000778 GO:0016020|GO:0016491
Vvi1g1612 681 CDD NOX_Duox_like_FAD_NADP 605 679 - -
Vvi1g1612 681 FunFam Respiratory burst oxidase homolog A 140 260 - -
Vvi1g1612 681 Pfam Ferric reductase like transmembrane component 402 559 IPR013130 -
Vvi1g1612 681 SFLD NADPH oxidase subgroup (NOX) 139 680 - -
Vvi1g1612 681 PANTHER NADPH OXIDASE 204 678 - -
Vvi1g1612 681 SUPERFAMILY Riboflavin synthase domain-like 602 676 IPR017938 -
Vvi1g1612 681 Gene3D - 140 260 - -
Vvi1g1612 681 ProSiteProfiles EF-hand calcium-binding domain profile. 239 274 IPR002048 GO:0005509
Vvi1g1612 681 FunFam Respiratory burst oxidase homolog A 589 681 - -
Vvi1g1612 681 MobiDBLite consensus disorder prediction 1 58 - -
Vvi1g1612 681 ProSitePatterns EF-hand calcium-binding domain. 252 264 IPR018247 -
Vvi1g1612 681 MobiDBLite consensus disorder prediction 39 53 - -
Vvi1g1612 681 Gene3D Translation factors 588 679 - -
Vvi1g1612 681 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 598 681 IPR017927 GO:0016491
Vvi1g1612 681 SUPERFAMILY EF-hand 171 315 IPR011992 -
Vvi1g1612 681 Pfam FAD-binding domain 602 680 IPR013112 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1612 Vvi-Chr1 22816161 22819209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1612 6 681 Miscellaneous Gene Families AT5G47910 68.915 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1612 K13447 - vvi:100257489 1361.67