Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1611 ATGATGAGAATCGATGATAACTCCGACACCGAGAGCGTCCAAAGTGACAAAGCCTCCTACAGTGGCCCTCTGGCCGGACCTCCCAACAAGAAGAGATCCGCAAGAAAGAGTGCCAGATTCAATATTCCTCCAGAGACCTCCCCCCAGTTGAAGACCAGCAGCGTTACTCGCCGTGATGATGATGATGCCTACGTGGAGATCACTCTCGACATTCTTGATGACTCCATTGCTGTTCACAGCGTCCAGGCTGCTGGTGGAGCAAAGGGCGAGGATCCGGAGCTGGCCCTGCTGGCCAAGAAGACCCTCGAGAAGAAGTCCTCCTTAGGTTCCTCCGTCTTCCGCAACACCTCCTCTAGAATCAAACAGGTCTCTCAGGAGCTCAAACGCTTCGCTTCCCTTTCAAGGCGGCCGTCTGCTAGACATTTTGATAGGACAAAGTCGGCTGTGACTCATGCCTTGAAGGGACTCAAGTTCATCACCACCAAGGCCGGCGGTGGTGCCGCTGGGTGGCCCGCCGTTGAGAAGCGATTCGATGAACTCACTGCTCCCACCAACGGCCATCTTCACTTCTCCTTGTTCTGCGAATGCATTGGTAGGATGAAGGACTCCAAGGAATTCGCCGGTGAGCTGTTCCATGCACTTGCCCGGAGGCATAATATAACGGGAGATTCCATTGATAAGGCGCAGCTCAAGGCCTTCTGGGAGCAGATCTCCGATCAGGGTTTCGACTCCCGCCTCCAGACTTTCTTTGACATGGTGGATAAAAACGCTGACGGTAGAATCACAGAGGAAGAAGTCGGAGAGATTATCAGTCTCAGTGCTTCTGCCAACAAGCTCTCCAATATTCAGAAACAAGCAAATGAGTATGCAGCATTGATCATGGAAGAACTGGACCCAGATAATGTCGGATACATCATGGTTCAGAACCTGGAAACTCTGCTGTTGCAAGCACCAAATCAATCAGTTAGAGTAGGAGATAGTCGGATTCTGAGCCAGCTGTTAAGCCAGAAGCTCAAGCCCACGCAAGAGAACAACCCATTACGGAGATGGTACCAGAAGACCAAGTACTTCATCATGGATAACTGGCAGCGGCTCTGGGTTATGATGTTGTGGCTTGGAATCGTGGCAAGCCTCTTCACATACAAGTTTGTTCAGTATCGCCATAAGGCTGCTTACGAGGTGATGGGATATTGTGTCTGCACTGCAAAAGGAGCAGCGGAGACCCTTAAGTTCAACATGGCACTAATTTTACTTCCAGTCTGCCGGAACACCATCACCTGGCTGAGAAACAAGACCAAATTAGGCATTGTTGTTCCCTTTGACGATAATCTAAACTTCCACAAGGTCATTGCAGTAGCAATTGCTGTAGGGGTTGCACTACACGCTGGTGCTCATCTAACATGTGATTTCCCAAGACTTATTCACGCGACAGAAGAGGCGTACGAGCCCATGGAACCCTACTTTGGCGAGGAGCAGCCTTCCGACATCTGGTGGTTTTTGAAAGGAGTGGAAGGGGTGACTGGTATTATAATCGTGGTCTTGATGGCCATAGCTTTCACACTAGCCACCCCTTGGTTTAGGCGGAATAAGCTGAATCTCCCCGTAACCCTTAAAAAACTCTCCGGGTTCAATGCTTTCTGGTATTCACACCATCTTTTTGTCATCGTCTACGTTCTCCTGATCGTCCATGGCATTTACCTTTATCTTACCAAGGAATGGTATAACAAAACGACATGGATGTACATTGCAGTTCCAGTGGCCCTCTATGCATGTGAAAGGTTGATTAGAGCTTTTAGATCAACCATCAAGCCTGTTAAGATTCTAAAGGTTGCTGTTTATCCAGGAAATGTGTTGACATTGCACATGACAAAGCCCCAGGGCTTCAAATACAGAAGTGGACAGTACATGTTTGTCAACTGCTCAGCGGTTTCTCCCTTCGAATGGCACCCATTTTCTATCACTTCAGCACCGGGAGATGACTATCTAAGTGTTCACATTCGAACTCTTGGCGACTGGACACGACAATTGAAAACTGTTTTCTCTGAGGTTTGCCTGCCTCCAACTGGTGGGAAAAGTGGGCTGCTCAGAGCCGATTGCTCGCAAGAAGGAGACGGTCCTAACTTTCCGAAGATCTTGATAGACGGTCCATATGGAGCACCAGCACAAGACTACAAGAAATACGACGTGGTGTTGCTGGTTGGGCTGGGAATAGGTGCCACCCCCATGATCAGCATAGTCAAGGACATCATCAGCAACATGAAGACCAAGGACCAAGAAACGGAGGACATACAAATAACAGTTGAGACTACCCCGGATCATGACAATGGCAACAGGAAGAAGAAGAACAAGAAAACTTTCAAGACCAAGAGAGCCTACTATTATTGGGTAACCAGGGAACAAGGTTCATTCGAGTGGTTCAAAGGGATAATGAACGAGGTTGCGGAGATGGATGAGAAGGGTGTTATAGAGCTGCACAACTACTGCACAAGCGTGTTTGAAGAAGGAGACGCCAGGTCTGCTCTCATAACCATGCTTCAGTCCCTCCATCACGCCAAGAACGGCGTGGACGTGGTGTCAGGGACTCGTGTAAAATCCCACTTTGCCAAACCCAACTGGCGACAAGTCTTCAAGAAGATCGCTATCCAGCATCCTGATAGTCGAGTTGGCGTTTTCTACTGCGGGGCACCGGCACTCACTAAGGATCTACGGCAACTAGCTTTGGACTTCTCCCACAGAACCACCACCAAGTTCGATTTTCACAAAGAGAATTTTTAG 2775 0.4894 MMRIDDNSDTESVQSDKASYSGPLAGPPNKKRSARKSARFNIPPETSPQLKTSSVTRRDDDDAYVEITLDILDDSIAVHSVQAAGGAKGEDPELALLAKKTLEKKSSLGSSVFRNTSSRIKQVSQELKRFASLSRRPSARHFDRTKSAVTHALKGLKFITTKAGGGAAGWPAVEKRFDELTAPTNGHLHFSLFCECIGRMKDSKEFAGELFHALARRHNITGDSIDKAQLKAFWEQISDQGFDSRLQTFFDMVDKNADGRITEEEVGEIISLSASANKLSNIQKQANEYAALIMEELDPDNVGYIMVQNLETLLLQAPNQSVRVGDSRILSQLLSQKLKPTQENNPLRRWYQKTKYFIMDNWQRLWVMMLWLGIVASLFTYKFVQYRHKAAYEVMGYCVCTAKGAAETLKFNMALILLPVCRNTITWLRNKTKLGIVVPFDDNLNFHKVIAVAIAVGVALHAGAHLTCDFPRLIHATEEAYEPMEPYFGEEQPSDIWWFLKGVEGVTGIIIVVLMAIAFTLATPWFRRNKLNLPVTLKKLSGFNAFWYSHHLFVIVYVLLIVHGIYLYLTKEWYNKTTWMYIAVPVALYACERLIRAFRSTIKPVKILKVAVYPGNVLTLHMTKPQGFKYRSGQYMFVNCSAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRQLKTVFSEVCLPPTGGKSGLLRADCSQEGDGPNFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIISNMKTKDQETEDIQITVETTPDHDNGNRKKKNKKTFKTKRAYYYWVTREQGSFEWFKGIMNEVAEMDEKGVIELHNYCTSVFEEGDARSALITMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVFKKIAIQHPDSRVGVFYCGAPALTKDLRQLALDFSHRTTTKFDFHKENF* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1611 924 Gene3D Translation factors 590 682 - -
Vvi1g1611 924 PRINTS Cytochrome B-245 heavy chain signature 450 468 IPR000778 GO:0016020|GO:0016491
Vvi1g1611 924 PRINTS Cytochrome B-245 heavy chain signature 709 722 IPR000778 GO:0016020|GO:0016491
Vvi1g1611 924 PRINTS Cytochrome B-245 heavy chain signature 543 563 IPR000778 GO:0016020|GO:0016491
Vvi1g1611 924 PRINTS Cytochrome B-245 heavy chain signature 732 749 IPR000778 GO:0016020|GO:0016491
Vvi1g1611 924 PANTHER NADPH OXIDASE 206 924 - -
Vvi1g1611 924 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 710 909 IPR039261 -
Vvi1g1611 924 SUPERFAMILY Riboflavin synthase domain-like 604 719 IPR017938 -
Vvi1g1611 924 ProSiteProfiles EF-hand calcium-binding domain profile. 241 276 IPR002048 GO:0005509
Vvi1g1611 924 SFLD NADPH oxidase subgroup (NOX) 115 924 - -
Vvi1g1611 924 Gene3D - 142 262 - -
Vvi1g1611 924 MobiDBLite consensus disorder prediction 1 58 - -
Vvi1g1611 924 Pfam Ferric reductase like transmembrane component 404 561 IPR013130 -
Vvi1g1611 924 SUPERFAMILY EF-hand 173 318 IPR011992 -
Vvi1g1611 924 ProSitePatterns EF-hand calcium-binding domain. 254 266 IPR018247 -
Vvi1g1611 924 Pfam Respiratory burst NADPH oxidase 142 244 IPR013623 GO:0004601|GO:0050664
Vvi1g1611 924 Pfam FAD-binding domain 604 720 IPR013112 GO:0016491
Vvi1g1611 924 FunFam Respiratory burst oxidase protein A 718 924 - -
Vvi1g1611 924 Gene3D - 718 924 IPR039261 -
Vvi1g1611 924 FunFam Respiratory burst oxidase homolog A 142 262 - -
Vvi1g1611 924 Pfam Ferric reductase NAD binding domain 727 906 IPR013121 GO:0016491
Vvi1g1611 924 SFLD Ferric reductase subgroup (FRE) 349 924 - -
Vvi1g1611 924 CDD EFh 224 271 IPR002048 GO:0005509
Vvi1g1611 924 FunFam Respiratory burst oxidase homolog A 591 683 - -
Vvi1g1611 924 CDD NOX_Duox_like_FAD_NADP 607 924 - -
Vvi1g1611 924 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 600 723 IPR017927 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1611 Vvi-Chr1 22798871 22802956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1611 5 924 Miscellaneous Gene Families AT5G47910 73.218 0.0 1401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1611 K13447 - vvi:100262614 1834.31