Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g1607 | ATGGAAGGAAGGCAGATCCGTGCGGTGTTGGTGTTGGTAGTGATTTCTTGCGTTGGCTTCCAGATCCGCGCTTCTGATCCGATCTTTATTGAGTCCTTCGATGAGTCTTTCGATGGGCGCTGGATTGTTTCTGAGAAAGACGACTATAAAGGTATATGGAAACACTCAAAGAGCGAGGGACATGATGATTATGGGCTTCTTGTCAGTGAGCAGGCAAAGAAGTATGCAATAGTGAAAGAGCTTGATGAAGCCGTTAGTCTCAAAGATGGAACCATTGTTCTGCAATTTGAGGTGCGGCTCCAGAAAGGATTGGAATGTGGTGGTGCATACTTGAAATACCTCCGACCCCAGGAGGCTGGATGGAAACCTGCTGAGTTTGATAATGACTCTCCATACTCCATAATGTTTGGACCAGACAAATGTGGGTCGACAAACAAGGTGCACTTCATCCTTAAGCACAAGAACCCCAAAAGTGGGAAATATGTTGAGCACCATCTCAAGTACCCTCCTTCTGTGCCCTCTGACAAACTGTCTCATGTCTACACCGCAATATTGAAACCTGATAATGAACTGCGGATTCTGATTGATGGGGAAGAGAAGAAGAAGGCAAATTTCCTCTCAGCTGAAGATTTTGAGCCAGCTCTAATTCCTGCTGAGACTATTCCGGATCCAAATGATAAGAAGCCAGAGGATTGGGATGAAAGGGCAAAGATTCCAGACCCAGATGCAGTGAAGCCAGATGATTGGGATGAGGATGCACCCATGGAGATTGAAGATGAGGAAGCTGTCAAGCCTGAAGGGTGGTTGGATGATGAGCCTGAGGAGATCGATGATCCTGATGCTTCAAAGCCAGAAGATTGGGATGATGAGGAGGACGGTGAATGGGAAGCTCCTAAAATTGATAACCCAAAGTGTGAGATAGCACCTGGATGTGGTGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCTTACAAAGGAAAATGGCATGCCCCTCTAATTGACAATCCAGATTATAAGGGCATTTGGAAGCCTCAGCAGATCCCAAACCCTGATTACTTTGAGCTCGACAGACCTGATTTTGAACCTATTACTGCCATTGGCATCGAGATTTGGACAATGCAAGATGGTGTTTTGTTTGATAATATTTTGATAGCCAATGATGAGAAGGTTGCAGAAGCATACAGGGACACTACATGGAAGCTGAAGTTTGAAGTCGAGAAAGAAAAACAAAAGGCTGAGGAAGCAGCATCTGGTCTCTCAGATGGCCTCTCTGGCTTGCAGGCAGTTTTTGACATTCTCTACAAAATAGGTGGCTTGCCTTTCTTGAGTGCTTACAAAGTCCAGATCTTTGATCTCATTGAAAAGGGAGAAAAACAACCAAATTTGACAATTGGCATCCTCGTATCCATTGTGGTGGTTATCTTGTCGGTTTTCTTTAAAATCCTTTTTGGTGGGAAAAAACCAGCGGTCAATGTCACTGAGACAAAGAATGAGGTGCCTGCAGAGACTTCTGATAATCAAGGAAGCAGTGCAGAGAAAGAAGATGAGAATGAGAATGAAGATGCGGCTGCTGCTGCTCCTCGCAGGAGGACTAGAAGGGATACCTGA | 1608 | 0.4521 | MEGRQIRAVLVLVVISCVGFQIRASDPIFIESFDESFDGRWIVSEKDDYKGIWKHSKSEGHDDYGLLVSEQAKKYAIVKELDEAVSLKDGTIVLQFEVRLQKGLECGGAYLKYLRPQEAGWKPAEFDNDSPYSIMFGPDKCGSTNKVHFILKHKNPKSGKYVEHHLKYPPSVPSDKLSHVYTAILKPDNELRILIDGEEKKKANFLSAEDFEPALIPAETIPDPNDKKPEDWDERAKIPDPDAVKPDDWDEDAPMEIEDEEAVKPEGWLDDEPEEIDDPDASKPEDWDDEEDGEWEAPKIDNPKCEIAPGCGEWKRPMKRNPAYKGKWHAPLIDNPDYKGIWKPQQIPNPDYFELDRPDFEPITAIGIEIWTMQDGVLFDNILIANDEKVAEAYRDTTWKLKFEVEKEKQKAEEAASGLSDGLSGLQAVFDILYKIGGLPFLSAYKVQIFDLIEKGEKQPNLTIGILVSIVVVILSVFFKILFGGKKPAVNVTETKNEVPAETSDNQGSSAEKEDENENEDAAAAAPRRRTRRDT* | 536 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g1607 | 535 | PANTHER | CALRETICULIN AND CALNEXIN | 8 | 272 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Vvi1g1607 | 535 | ProSitePatterns | Calreticulin family signature 2. | 134 | 142 | IPR018124 | GO:0005509 | |
| Vvi1g1607 | 535 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 27 | 238 | IPR013320 | - | |
| Vvi1g1607 | 535 | PRINTS | Calreticulin signature | 333 | 352 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Vvi1g1607 | 535 | PRINTS | Calreticulin signature | 365 | 385 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Vvi1g1607 | 535 | PRINTS | Calreticulin signature | 276 | 298 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Vvi1g1607 | 535 | PRINTS | Calreticulin signature | 101 | 119 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Vvi1g1607 | 535 | PRINTS | Calreticulin signature | 228 | 241 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Vvi1g1607 | 535 | PRINTS | Calreticulin signature | 130 | 146 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Vvi1g1607 | 535 | MobiDBLite | consensus disorder prediction | 223 | 250 | - | - | |
| Vvi1g1607 | 535 | ProSitePatterns | Calreticulin family repeated motif signature. | 276 | 288 | IPR018124 | GO:0005509 | |
| Vvi1g1607 | 535 | SUPERFAMILY | P-domain of calnexin/calreticulin | 215 | 354 | IPR009033 | GO:0005509|GO:0005515 | |
| Vvi1g1607 | 535 | Gene3D | - | 29 | 394 | - | - | |
| Vvi1g1607 | 535 | ProSitePatterns | Calreticulin family signature 1. | 99 | 114 | IPR018124 | GO:0005509 | |
| Vvi1g1607 | 535 | FunFam | Calnexin homolog | 29 | 210 | - | - | |
| Vvi1g1607 | 535 | MobiDBLite | consensus disorder prediction | 251 | 296 | - | - | |
| Vvi1g1607 | 535 | MobiDBLite | consensus disorder prediction | 494 | 535 | - | - | |
| Vvi1g1607 | 535 | MobiDBLite | consensus disorder prediction | 520 | 535 | - | - | |
| Vvi1g1607 | 535 | MobiDBLite | consensus disorder prediction | 214 | 303 | - | - | |
| Vvi1g1607 | 535 | FunFam | Calnexin homolog | 214 | 359 | - | - | |
| Vvi1g1607 | 535 | Pfam | Calreticulin family | 29 | 384 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Vvi1g1607 | 535 | Gene3D | Calreticulin/calnexin, P domain | 214 | 358 | IPR009033 | GO:0005509|GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g1607 | Vvi-Chr1 | 22768963 | 22773892 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi1g1607 | 1 | 535 | Miscellaneous Gene Families | AT5G61790 | 74.630 | 0.0 | 788 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g1607 | K08054 | - | vvi:100260960 | 1000.35 |