Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1603 ATGGGTACTCTGAATTTGACTGTACAGGTTCTTGACATCTCTCCCAAGGTCACCCTCTCAGACTTGAATATCTTTTTCTCTTACTGTGGAACTGTTGACAACATCCAGCTCTGCAGAAAAAATGACCAGACACAGTTGGCTTTTGTGACATTCAAGCAGCCTTATGCCTTTCAAACTGCACTTCTCCTAAATGGAGCTGTTATTGGAGATAGTCCAATTCGCATACTGGCCTTACAGAATTTGGCAATTCATCCCATCCCAGACAAAAGGAATTGCAAAACCCAGAATAAGGAGAAGCAAGGAATCTTTCCAGTAGTGAACTCTGCTATACAAGGCATAGCTTCAAAAAGTATGGAGATGTTTAACAAGACTGCTGATGAGTTGGAGGAGAATTGCAAGCTTTCAGAGAAGGGCAGAGCACTAATGCACCAGACAAGATTGGCAATCTGTGCTGCTGAGAAGGGGGCAGGTCAACTTGGCACAGCTATCATGAATAACGAGTATGTTTCAAATGGCTCCATTTGGTTGTCTGGTGTGGTGGACAGGGCCTCCAAATATGCCACTGCCAGGAAGCAGAAATGA 582 0.4416 MGTLNLTVQVLDISPKVTLSDLNIFFSYCGTVDNIQLCRKNDQTQLAFVTFKQPYAFQTALLLNGAVIGDSPIRILALQNLAIHPIPDKRNCKTQNKEKQGIFPVVNSAIQGIASKSMEMFNKTADELEENCKLSEKGRALMHQTRLAICAAEKGAGQLGTAIMNNEYVSNGSIWLSGVVDRASKYATARKQK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1603 193 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 193 - -
Vvi1g1603 193 Gene3D - 4 76 IPR012677 -
Vvi1g1603 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Vvi1g1603 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vvi1g1603 193 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vvi1g1603 193 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1603 - - vvi:104880947 383.645