Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1602 ATGCAGGGAAAATTCTATACAGCACCGCTGCCTCCGCAGCTATCCGACTCTAACCGGCGAATCATTGATACCAATACCCCAACAATGAGGGTTTATCAAATCTGGAAAGGCAGCAATAGATTCTTCTGTGGTGGAAGACTTATATTTGGTCCAGATGCAAGGTCTCTGTTGCTTACGGTGTCCATGATTGTGGTTCCAGTAATACTATTCTGTGCTTTTGTTTCTCAAAGGCTCATTGATGAATTCAACCACCATTTTGGCAATCTTATTGTTGGTATTTCTGTTGCGCTCACAGTATATATTATGATCCTTCTCTTCCTTACTTCTGCAAGAGATCCTGGCATTATTCCCCGTAATCCACATCCTCCTGAACCAGAAGACGACACTGCCTCTGGTATCTCCACAGACTGGGTAGGAAGCCAGAGTGGTGCTCCTAATATACCTCCCACAAAAGATGTCATGGTCAATGGGATGGTAGTCAAGGTCAAATACTGCCAAACATGCATGCTATATCGCCCGCCAAGATGCTCTCATTGCTCTATATGTAATAACTGTGTTGATCGTTTTGACCACCATTGCCCATGGGTAGGGCAATGTATTGGAAAGAGGAATTATAGATTCTTCTTCATGTTTGTGTCCTCCACAACCATGCTCTGCCTATATGTTTTTGCTTTCTGCTGGGTAAACATTGAGAGAATAATGGAAGCATACCATTGTAGTCTTGGGAGGGCTTTTCTGAAGTCCCCTGTTTCAGGAATTCTCATACTATACACATTCATAGCAGCTTGGTTTGTTGGAGGTCTCACTGCTTTTCATCTCTACTTAATTTTCACCAATCAGACCACATATGAGAATTTCCGGTATCGATATGATGGGAAAATGAATCCTCATAACCTTGGATTCTGGCGCAATATTAGGGAGATCTTCTTCTCTAAAATTCCTAGTTCTAAGAACAACTTCCGTGCTCAGGTGAAGGGAGACTCTTCTTCTGTTTTCAACACTTCAATGTCCTTGGGCCATGCTATGAGCCCTGAGATGCCCAAAAGGAGCTTTGACATAGAAATGGGGAAACGACAAGCTGTTGCTGCTGAGGAGTTTGAAGATATACATAGCCAAATTGATAGTATTGGCGGATCAGAGAGGTGCGGACCCCAGCCGAGACACACAAACCGGGACCATAAAGGGAACTGGGAGATAACACCTGATATACATATGTTGGCTGCTGAATTTGGAATGCAACATGGTTCAACAGTCAGAGAGAAGATTCATGGAGTCCGTTGA 1281 0.4348 MQGKFYTAPLPPQLSDSNRRIIDTNTPTMRVYQIWKGSNRFFCGGRLIFGPDARSLLLTVSMIVVPVILFCAFVSQRLIDEFNHHFGNLIVGISVALTVYIMILLFLTSARDPGIIPRNPHPPEPEDDTASGISTDWVGSQSGAPNIPPTKDVMVNGMVVKVKYCQTCMLYRPPRCSHCSICNNCVDRFDHHCPWVGQCIGKRNYRFFFMFVSSTTMLCLYVFAFCWVNIERIMEAYHCSLGRAFLKSPVSGILILYTFIAAWFVGGLTAFHLYLIFTNQTTYENFRYRYDGKMNPHNLGFWRNIREIFFSKIPSSKNNFRAQVKGDSSSVFNTSMSLGHAMSPEMPKRSFDIEMGKRQAVAAEEFEDIHSQIDSIGGSERCGPQPRHTNRDHKGNWEITPDIHMLAAEFGMQHGSTVREKIHGVR* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1602 426 MobiDBLite consensus disorder prediction 374 396 - -
Vvi1g1602 426 Pfam DHHC palmitoyltransferase 163 287 IPR001594 GO:0016409
Vvi1g1602 426 ProSiteProfiles DHHC domain profile. 163 213 - -
Vvi1g1602 426 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 63 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1602 Vvi-Chr1 22741318 22745389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1602 89 311 Lipid Metabolism Gene Families AT4G22750 27.049 3.48e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1602 - - vvi:100255765 896.345